vegan: Community Ecology Package

Ordination methods, diversity analysis and other functions for community and vegetation ecologists.

Version:	2.6-8
Depends:	permute (≥ 0.9-0), lattice, R (≥ 4.1.0)
Imports:	MASS, cluster, mgcv
Suggests:	parallel, tcltk, knitr, markdown
Published:	2024-08-28
DOI:	10.32614/CRAN.package.vegan
Author:	Jari Oksanen [aut, cre], Gavin L. Simpson [aut], F. Guillaume Blanchet [aut], Roeland Kindt [aut], Pierre Legendre [aut], Peter R. Minchin [aut], R.B. O'Hara [aut], Peter Solymos [aut], M. Henry H. Stevens [aut], Eduard Szoecs [aut], Helene Wagner [aut], Matt Barbour [aut], Michael Bedward [aut], Ben Bolker [aut], Daniel Borcard [aut], Gustavo Carvalho [aut], Michael Chirico [aut], Miquel De Caceres [aut], Sebastien Durand [aut], Heloisa Beatriz Antoniazi Evangelista [aut], Rich FitzJohn [aut], Michael Friendly [aut], Brendan Furneaux [aut], Geoffrey Hannigan [aut], Mark O. Hill [aut], Leo Lahti [aut], Dan McGlinn [aut], Marie-Helene Ouellette [aut], Eduardo Ribeiro Cunha [aut], Tyler Smith [aut], Adrian Stier [aut], Cajo J.F. Ter Braak [aut], James Weedon [aut]
Maintainer:	Jari Oksanen <jhoksane at gmail.com>
BugReports:	https://github.com/vegandevs/vegan/issues
License:	GPL-2
URL:	https://github.com/vegandevs/vegan
NeedsCompilation:	yes
Materials:	NEWS
In views:	Environmetrics, Phylogenetics, Psychometrics, Spatial
CRAN checks:	vegan results

Documentation:

Reference manual:	vegan.pdf
Vignettes:	Design decisions and implementation (source, R code) Diversity analysis in vegan (source, R code) Introduction to ordination in vegan (source, R code) Partition of Variation (source, R code) vegan FAQ (source, R code)

Downloads:

Package source:	vegan_2.6-8.tar.gz
Windows binaries:	r-devel: vegan_2.6-8.zip, r-release: vegan_2.6-8.zip, r-oldrel: vegan_2.6-8.zip
macOS binaries:	r-release (arm64): vegan_2.6-8.tgz, r-oldrel (arm64): vegan_2.6-8.tgz, r-release (x86_64): vegan_2.6-8.tgz, r-oldrel (x86_64): vegan_2.6-8.tgz
Old sources:	vegan archive

Reverse dependencies:

Reverse depends:	analogue, BBI, betaper, BiodiversityR, bipartite, blender, cocorresp, CommEcol, diathor, EcoIndR, FD, FreeSortR, ggordiplots, glmm.hp, KnowBR, metacom, MiSPU, mpmcorrelogram, octopucs, ordiBreadth, OTUbase, phylolm.hp, picante, rareNMtests, rdacca.hp, segRDA, SRS, vegan3d
Reverse imports:	abseqR, adegenet, adespatial, aIc, AICcPermanova, AlleleShift, animalcules, aPCoA, Arothron, ausplotsR, barcodetrackR, BAT, bingat, BioTIMEr, CAGEr, canaper, cassandRa, cati, chemodiv, cml, CNVRG, codyn, combi, comsimitv, CoreMicrobiomeR, DarkDiv, dartR, dartR.spatial, dilp, DIscBIO, dispRity, divent, divvy, douconca, dynRB, easyCODA, ecan, ecocbo, ecospat, EcotoneFinder, edmcr, enmpa, entropart, EvaluateCore, evolqg, flowCHIC, flowCyBar, forams, fundiversity, funspace, GABB, gdm, GOCompare, goeveg, GPA, graph4lg, grapherator, GRNNs, GUniFrac, hilldiv, HMP, HybridMicrobiomes, iCAMP, isopam, knfi, LDM, LinkHD, Linnorm, LorMe, MBECS, mcMST, MEAL, MEclustnet, memgene, metrix, mFD, mia, microbial, microbiome, microbiomeMQC, MicrobiotaProcess, microeco, mirt, mixKernel, mobsim, Momocs, MorphoTools2, NADA2, naturaList, neonPlantEcology, netassoc, netcom, netZooR, NicheBarcoding, node2vec, nodiv, NST, omicplotR, paco, palaeoSig, paleoAM, pathlinkR, PathoStat, patternize, PCPS, pctax, pez, phyloregion, phyloseq, PIUMA, PLSDAbatch, PolicyPortfolios, POMA, PopGenReport, poppr, powerTCR, ProjectionBasedClustering, QFASA, RaceID, recluster, rioja, RPANDA, Rtapas, RTCC, RVAideMemoire, RVenn, seriation, shapeR, SigTree, smacofx, smartsnp, soundecology, spaceNet, SparseLPM, spmoran, SSP, stops, supportR, surveyvoi, SYNCSA, synergyfinder, tapnet, TaxaNorm, Toothnroll, TraMineR, tripr, tspmeta, vcfR, vegclust, visvow, Xplortext, zetadiv
Reverse suggests:	abdiv, betapart, biosampleR, bipartiteD3, bluster, curatedMetagenomicData, dimRed, dissCqN, divDyn, ecolottery, ecoregime, ecospace, ecostats, ecotraj, eHOF, enveomics.R, epiphy, GCalignR, glottospace, hagis, HDANOVA, idar, interactiveDisplay, iSEEtree, LegATo, mefa, MetaNet, MGnifyR, miaSim, miaViz, MiRKAT, MiscMetabar, multiWGCNA, ordr, pcutils, permute, phylotools, Platypus, primer, ProcMod, pRoloc, PtH2O2lipids, raptr, ReporterScore, restoptr, Rraven, RRphylo, sads, sharpshootR, shipunov, SoundShape, spaa, SQMtools, tidypaleo, ulrb, vegdata, vegtable, WeightedCluster, yaImpute
Reverse enhances:	labdsv

Linking:

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