phylospatial: Spatial Phylogenetic Analysis
Conduct various analyses on spatial phylogenetic diversity patterns. Use your data on an evolutionary tree and geographic distributions of the terminal taxa to compute diversity and endemism metrics, test significance with null model randomization, analyze community turnover and biotic regionalization, and perform spatial conservation prioritizations. All functions support quantitative community data in addition to binary data.
| Version: | 1.1.0 |
| Depends: | R (≥ 3.5) |
| Imports: | ape, sf, stats, terra, vegan |
| Suggests: | canaper, furrr, future, testthat (≥ 3.0.0), betapart, knitr, rmarkdown, tmap, magrittr, hillR, picante, phytools |
| Published: | 2025-04-09 |
| Author: | Matthew Kling 
[aut, cre, cph] |
| Maintainer: | Matthew Kling <mattkling at berkeley.edu> |
| BugReports: | https://github.com/matthewkling/phylospatial/issues |
| License: | MIT + file LICENSE |
| URL: | https://matthewkling.github.io/phylospatial/, https://github.com/matthewkling/phylospatial |
| NeedsCompilation: | no |
| Materials: | README NEWS |
| CRAN checks: | phylospatial results |
Documentation:
| Reference manual: | phylospatial.pdf |
| Vignettes: |
alpha-diversity (source, R code) beta-diversity (source, R code) phylospatial-data (source, R code) prioritization (source, R code) |
Downloads:
| Package source: | phylospatial_1.1.0.tar.gz |
| Windows binaries: | r-devel: phylospatial_1.0.0.zip, r-release: phylospatial_1.0.0.zip, r-oldrel: phylospatial_1.0.0.zip |
| macOS binaries: | r-devel (arm64): phylospatial_1.1.0.tgz, r-release (arm64): phylospatial_1.0.0.tgz, r-oldrel (arm64): phylospatial_1.0.0.tgz, r-devel (x86_64): phylospatial_1.0.0.tgz, r-release (x86_64): phylospatial_1.0.0.tgz, r-oldrel (x86_64): phylospatial_1.0.0.tgz |
| Old sources: | phylospatial archive |
Linking:
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