stan4bart: Bayesian Additive Regression Trees with Stan-Sampled Parametric Extensions

Fits semiparametric linear and multilevel models with non-parametric additive Bayesian additive regression tree (BART; Chipman, George, and McCulloch (2010) <doi:10.1214/09-AOAS285>) components and Stan (Stan Development Team (2021) <https://mc-stan.org/>) sampled parametric ones. Multilevel models can be expressed using 'lme4' syntax (Bates, Maechler, Bolker, and Walker (2015) <doi:10.18637/jss.v067.i01>).

Version: 0.0-2
Depends: R (≥ 3.5-0), methods, dbarts (≥ 0.9-20)
Imports: stats, Matrix, parallel, RcppParallel (≥ 5.1.1)
LinkingTo: BH (≥ 1.72.0.3), Rcpp (≥ 1.0.5), RcppEigen (≥ 0.3.3.7.0), RcppParallel (≥ 5.1.1), dbarts (≥ 0.9-20)
Suggests: testthat (≥ 2.0-0), lme4
Published: 2021-12-06
Author: Vincent Dorie ORCID iD [aut, cre], Ben Goodrich [ctb] (rstanarm_functions.R, StanHeaders), Jonah Gabry [ctb] (rstanarm_functions.R, StanHeaders), Imad Ali [ctb] (rstanarm_functions.R), Sam Brilleman [ctb] (rstanarm_functions.R), Paul-Christian Burkner ORCID iD [ctb] (rstanarm_functions.R), Joshua Pritikin ORCID iD [ctb] (StanHeaders), Andrew Gelman ORCID iD [ctb] (StanHeaders), Bob Carpenter [ctb] (StanHeaders), Matt Hoffman [ctb] (StanHeaders), Daniel Lee [ctb] (StanHeaders), Michael Betancourt ORCID iD [ctb] (StanHeaders), Marcus Brubaker ORCID iD [ctb] (StanHeaders), Jiqiang Guo [ctb] (StanHeaders), Peter Li [ctb] (StanHeaders), Allen Riddell [ctb] (StanHeaders), Marco Inacio ORCID iD [ctb] (StanHeaders), Mitzi Morris [ctb] (StanHeaders), Jeffrey Arnold ORCID iD [ctb] (StanHeaders), Rob Goedman [ctb] (StanHeaders), Brian Lau [ctb] (StanHeaders), Rob Trangucci [ctb] (StanHeaders), Alp Kucukelbir [ctb] (StanHeaders), Robert Grant [ctb] (StanHeaders), Dustin Tran [ctb] (StanHeaders), Michael Malecki [ctb] (StanHeaders), Yuanjun Gao [ctb] (StanHeaders), Trustees of Columbia University [cph] (rstanarm_functions.R, StanHeaders), Lawrence Livermore National Security [cph] (CVODES), The Regents of the University of California [cph] (CVODES), Southern Methodist University [cph] (CVODES), Douglas Bates ORCID iD [ctb] (lme4_functions.R), Martin Maechler ORCID iD [ctb] (lme4_functions.R), Ben Bolker ORCID iD [ctb] (lme4_functions.R), Steve Walker ORCID iD [ctb] (lme4_functions.R), Armon Dadgar [ctb] (adaptive radix tree), Bothner Per [ctb] (config.guess), Elliston Ben [ctb] (config.guess), Free Software Foundation [cph] (config.sub), Guido U Draheim [ctb] (ax_check_compile_flag.m4), Maarten Bosmans [ctb] (ax_check_compile_flag.m4), Christophe Tournayre [ctb] (ax_ext.m4), Michael Petch [ctb] (ax_ext.m4, ax_gcc_x86_avx_xgetbv.m4, ax_gcc_x86_cpuid.m4), Rafael de Lucena Valle [ctb] (ax_ext.m4), Steven G. Johnson ORCID iD [ctb] (ax_gcc_x86_cpuid.m4), Matteo Frigo [ctb] (ax_gcc_x86_cpuid.m4), Scott Pakin ORCID iD [ctb] (ax_func_posix_memalign.m4)
Maintainer: Vincent Dorie <vdorie at gmail.com>
BugReports: https://github.com/vdorie/stan4bart/issues
License: GPL (≥ 3)
URL: https://github.com/vdorie/stan4bart
NeedsCompilation: yes
CRAN checks: stan4bart results

Documentation:

Reference manual: stan4bart.pdf

Downloads:

Package source: stan4bart_0.0-2.tar.gz
Windows binaries: r-devel: stan4bart_0.0-2.zip, r-devel-UCRT: stan4bart_0.0-2.zip, r-release: stan4bart_0.0-2.zip, r-oldrel: stan4bart_0.0-2.zip
macOS binaries: r-release (arm64): stan4bart_0.0-2.tgz, r-release (x86_64): stan4bart_0.0-2.tgz, r-oldrel: stan4bart_0.0-2.tgz
Old sources: stan4bart archive

Linking:

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