phylobase: Base Package for Phylogenetic Structures and Comparative Data

Provides a base S4 class for comparative methods, incorporating one or more trees and trait data.

Version: 0.8.12
Imports: ade4, ape (≥ 3.0), Rcpp (≥ 0.11.0), rncl (≥ 0.6.0), grid, methods, stats, RNeXML
LinkingTo: Rcpp
Suggests: MASS, testthat (≥ 0.8.1), knitr, rmarkdown
Published: 2024-01-30
DOI: 10.32614/CRAN.package.phylobase
Author: R Hackathon et al. (alphabetically: Ben Bolker, Marguerite Butler, Peter Cowan, Damien de Vienne, Dirk Eddelbuettel, Mark Holder, Thibaut Jombart, Steve Kembel, Francois Michonneau, David Orme, Brian O'Meara, Emmanuel Paradis, Jim Regetz, Derrick Zwickl)
Maintainer: Francois Michonneau <francois.michonneau at>
License: GPL-2 | GPL-3 [expanded from: GPL (≥ 2)]
NeedsCompilation: yes
Materials: README NEWS
In views: Phylogenetics
CRAN checks: phylobase results


Reference manual: phylobase.pdf
Vignettes: The phylo4 classes and methods


Package source: phylobase_0.8.12.tar.gz
Windows binaries: r-devel:, r-release:, r-oldrel:
macOS binaries: r-release (arm64): phylobase_0.8.12.tgz, r-oldrel (arm64): phylobase_0.8.12.tgz, r-release (x86_64): phylobase_0.8.12.tgz, r-oldrel (x86_64): phylobase_0.8.12.tgz
Old sources: phylobase archive

Reverse dependencies:

Reverse imports: adephylo, adiv, changeRangeR, clusterExperiment, DAISIEprep, datelife, ddtlcm, nodeSub, PCPS, phyext2, phylocanvas, phylosem, phylosignal, phyloTop, SigTree
Reverse suggests: ecostats, phyloraster, RAINBOWR, rotl


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