geneviewer: Gene Cluster Visualizations
Provides tools for plotting gene clusters and transcripts by
importing data from GenBank, FASTA, and GFF files. It performs BLASTP and
MUMmer alignments [Altschul et al. (1990) <doi:10.1016/S0022-2836(05)80360-2>;
Delcher et al. (1999) <doi:10.1093/nar/27.11.2369>] and displays results on
gene arrow maps. Extensive customization options are available, including
legends, labels, annotations, scales, colors, tooltips, and more.
| Version: |
0.1.10 |
| Depends: |
R (≥ 3.5.0) |
| Imports: |
htmlwidgets, fontawesome, magrittr, dplyr, tidyr, rlang |
| Suggests: |
knitr, rmarkdown, shiny, biomaRt, pwalign, Biostrings, testthat (≥ 3.0.0) |
| Published: |
2025-01-10 |
| DOI: |
10.32614/CRAN.package.geneviewer |
| Author: |
Niels van der Velden [aut, cre] |
| Maintainer: |
Niels van der Velden <n.s.j.vandervelden at gmail.com> |
| BugReports: |
https://github.com/nvelden/geneviewer/issues |
| License: |
MIT + file LICENSE |
| URL: |
https://github.com/nvelden/geneviewer |
| NeedsCompilation: |
no |
| Language: |
en-US |
| Materials: |
README NEWS |
| CRAN checks: |
geneviewer results |
Documentation:
Downloads:
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