Last updated on 2025-01-14 21:49:12 CET.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 0.1.10 | 6.97 | 67.32 | 74.29 | OK | |
| r-devel-linux-x86_64-debian-gcc | 0.1.10 | 4.74 | 44.83 | 49.57 | OK | |
| r-devel-linux-x86_64-fedora-clang | 0.1.10 | 116.71 | OK | |||
| r-devel-linux-x86_64-fedora-gcc | 0.1.10 | 109.34 | OK | |||
| r-devel-windows-x86_64 | 0.1.10 | 13.00 | 91.00 | 104.00 | OK | |
| r-release-macos-arm64 | 0.1.10 | 44.00 | OK | |||
| r-release-macos-x86_64 | 0.1.10 | 88.00 | NOTE | |||
| r-release-windows-x86_64 | 0.1.10 | 10.00 | 107.00 | 117.00 | OK | |
| r-oldrel-macos-arm64 | 0.1.10 | 42.00 | ERROR | |||
| r-oldrel-macos-x86_64 | 0.1.10 | 106.00 | NOTE | |||
| r-oldrel-windows-x86_64 | 0.1.10 | 13.00 | 107.00 | 120.00 | NOTE |
Version: 0.1.10
Check: package dependencies
Result: NOTE
Package suggested but not available for checking: ‘pwalign’
Flavors: r-release-macos-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64
Version: 0.1.10
Check: examples
Result: ERROR
Running examples in ‘geneviewer-Ex.R’ failed
The error most likely occurred in:
> ### Name: GC_links
> ### Title: Add Links to GC Chart
> ### Aliases: GC_links
>
> ### ** Examples
>
> # Add links between all groups in each cluster
> genes_data <- data.frame(
+ start = c(10, 90, 130, 170, 240, 250, 300, 340, 380, 420),
+ end = c(40, 120, 160, 200, 210, 270, 330, 370, 410, 450),
+ name = c('Gene 1', 'Gene 2', 'Gene 3', 'Gene 4', 'Gene 5',
+ 'Gene 6', 'Gene 7', 'Gene 8', 'Gene 9', 'Gene 10'),
+ group = c('A', 'B', 'C', 'A', 'B', 'C', 'A', 'B', 'C', 'D'),
+ identity = c(NA, NA, NA, 50, 40, 100, 60, 65, 20, NA),
+ similarity = c(NA, NA, NA, 40, 30, 90, 50, 55, 10, NA),
+ cluster = c(1, 1, 1, 2, 2, 2, 3, 3, 3, 3)
+ )
> GC_chart(genes_data,
+ cluster = "cluster",
+ height = "200px") %>%
+ GC_links(
+ group = "group",
+ value1 = "A",
+ value2 = "B",
+ measure = "identity",
+ label = FALSE) %>%
+ GC_labels(label = "group")
>
> # Add links between group A of cluster 1 and A and B of cluster 2
> GC_chart(genes_data,
+ cluster = "cluster",
+ height = "200px") %>%
+ GC_labels(label = "group") %>%
+ GC_links(group = "group",
+ value1 = c("A", "A"),
+ value2 = c("B", "A"),
+ label = FALSE,
+ cluster = c(1,2))
>
> # Style links and color bar
> GC_chart(genes_data,
+ cluster = "cluster",
+ height = "200px"
+ ) %>%
+ GC_links(
+ group = "group",
+ data = NULL,
+ curve = TRUE,
+ measure = "identity",
+ show_links = TRUE,
+ label = TRUE,
+ normal_color = "#1f77b4",
+ inverted_color = "#d62728",
+ use_group_colors = FALSE,
+ color_bar = TRUE,
+ colorBarOptions = list(
+ x = 0,
+ y = 24,
+ width = 10,
+ height = 60,
+ labelOptions = list(
+ fontSize = 8,
+ xOffset = 2,
+ yOffset = 0
+ # Any other CSS style
+ ),
+ titleOptions = list(
+ fontSize = 10,
+ xOffset = 2,
+ yOffset = 0
+ # Any other CSS style
+ ),
+ barOptions = list(
+ stroke = "#000",
+ strokeWidth = 0.5,
+ opacity = 1
+ # Any other CSS style
+ )
+ ),
+ linkWidth = 1,
+ linkStyle = list(
+ stroke = "black",
+ strokeWidth = 0.5,
+ fillOpacity = 0.4
+ # Any other CSS style
+ ),
+ labelStyle = list(
+ fontSize = "8px"
+ # Any other CSS style
+ )
+ ) %>%
+ GC_labels(label = "group", cluster = 1) %>%
+ GC_clusterLabel()
Warning in file.copy(from, to, overwrite = TRUE, recursive = isdir, copy.mode = FALSE) :
problem creating directory /Volumes/Builds/packages/big-sur-arm64/results/4.3/geneviewer.Rcheck/geneviewer/htmlwidgets/lib/FileSaver-2.0.4: No space left on device
Warning in file.copy(from, to, overwrite = TRUE, recursive = isdir, copy.mode = FALSE) :
problem creating directory /Volumes/Builds/packages/big-sur-arm64/results/4.3/geneviewer.Rcheck/geneviewer/htmlwidgets/lib/html2canvas-1.4.1: No space left on device
Warning in dir.create(target_dir) :
cannot create dir 'lib/geneviewer-0.1.10', reason 'No space left on device'
Error in normalizePath(target_dir, "/", TRUE) :
path[1]="lib/geneviewer-0.1.10": No such file or directory
Calls: <Anonymous> ... lapply -> FUN -> copyDependencyToDir -> normalizePath
Execution halted
Flavor: r-oldrel-macos-arm64