clusterhap: Clustering Genotypes in Haplotypes

One haplotype is a combination of SNP (Single Nucleotide Polymorphisms) within the QTL (Quantitative Trait Loci). clusterhap groups together all individuals of a population with the same haplotype. Each group contains individual with the same allele in each SNP, whether or not missing data. Thus, clusterhap groups individuals, that to be imputed, have a non-zero probability of having the same alleles in the entire sequence of SNP's. Moreover, clusterhap calculates such probability from relative frequencies.

Version: 0.1
Depends: R (≥ 2.10)
Imports: graphics, utils
Suggests: knitr, rmarkdown, testthat
Published: 2016-05-16
DOI: 10.32614/CRAN.package.clusterhap
Author: Gaston Quero and Sebastian Simondi , with contributions from Victoria Bonnecarrere and Lucia Gutierrez
Maintainer: Gaston Quero <gastonquero at>
License: GPL-3
NeedsCompilation: no
CRAN checks: clusterhap results


Reference manual: clusterhap.pdf
Vignettes: Use clusterhap


Package source: clusterhap_0.1.tar.gz
Windows binaries: r-devel:, r-release:, r-oldrel:
macOS binaries: r-release (arm64): clusterhap_0.1.tgz, r-oldrel (arm64): clusterhap_0.1.tgz, r-release (x86_64): clusterhap_0.1.tgz, r-oldrel (x86_64): clusterhap_0.1.tgz


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