biogram: N-Gram Analysis of Biological Sequences
Tools for extraction and analysis of various n-grams (k-mers) derived from biological sequences (proteins or nucleic acids). Contains QuiPT (quick permutation test) for fast feature-filtering of the n-gram data.
| Version: | 1.6.3 |
| Depends: | R (≥ 3.0.0), slam |
| Imports: | combinat, entropy, partitions |
| Suggests: | ggplot2, knitr, testthat |
| Published: | 2020-03-31 |
| DOI: | 10.32614/CRAN.package.biogram |
| Author: | Michal Burdukiewicz
 [cre, aut],
Piotr Sobczyk [aut],
Chris Lauber [aut],
Dominik Rafacz [aut],
Katarzyna Sidorczuk
[ctb] |
| Maintainer: | Michal Burdukiewicz <michalburdukiewicz at gmail.com> |
| BugReports: | https://github.com/michbur/biogram/issues |
| License: | GPL-3 |
| URL: | https://github.com/michbur/biogram |
| NeedsCompilation: | no |
| Citation: | biogram citation info |
| Materials: | README, ChangeLog |
| CRAN checks: | biogram results |
Documentation:
| Reference manual: | biogram.html , biogram.pdf |
| Vignettes: |
biogram package - an overview (source, R code) |
Downloads:
| Package source: | biogram_1.6.3.tar.gz |
| Windows binaries: | r-devel: biogram_1.6.3.zip, r-release: biogram_1.6.3.zip, r-oldrel: biogram_1.6.3.zip |
| macOS binaries: | r-release (arm64): biogram_1.6.3.tgz, r-oldrel (arm64): biogram_1.6.3.tgz, r-release (x86_64): biogram_1.6.3.tgz, r-oldrel (x86_64): biogram_1.6.3.tgz |
| Old sources: | biogram archive |
Reverse dependencies:
| Reverse imports: | AmpGram, AmyloGram, CancerGram |
Linking:
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