Last updated on 2024-12-23 12:49:50 CET.
| Package | ERROR | OK |
|---|---|---|
| SIMplyBee | 1 | 12 |
Current CRAN status: ERROR: 1, OK: 12
Version: 0.4.1
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
...
--- re-building ‘A_Honeybee_biology.Rmd’ using rmarkdown
--- finished re-building ‘A_Honeybee_biology.Rmd’
--- re-building ‘B_Multiple_colonies.Rmd’ using rmarkdown
--- finished re-building ‘B_Multiple_colonies.Rmd’
--- re-building ‘C_Colony_events.Rmd’ using rmarkdown
--- finished re-building ‘C_Colony_events.Rmd’
--- re-building ‘D_Crossing.Rmd’ using rmarkdown
** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/SIMplyBee.Rcheck/vign_test/SIMplyBee/vignettes/D_Crossing_files/figure-html/unnamed-chunk-12-1.png
288x288 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 10148 bytes
Input file size = 10238 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 7834
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 7834
Output IDAT size = 7834 bytes (2314 bytes decrease)
Output file size = 7912 bytes (2326 bytes = 22.72% decrease)
--- finished re-building ‘D_Crossing.Rmd’
--- re-building ‘E_Genomics.Rmd’ using rmarkdown
** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/SIMplyBee.Rcheck/vign_test/SIMplyBee/vignettes/E_Genomics_files/figure-html/plot genoQ with poolW-1.png
288x288 pixels, 8 bits/pixel, 256 colors in palette
Reducing image to 8 bits/pixel, grayscale
Input IDAT size = 8952 bytes
Input file size = 9822 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 8461
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 8461
Output IDAT size = 8461 bytes (491 bytes decrease)
Output file size = 8539 bytes (1283 bytes = 13.06% decrease)
** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/SIMplyBee.Rcheck/vign_test/SIMplyBee/vignettes/E_Genomics_files/figure-html/view diagonal-1.png
288x288 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 27574 bytes
Input file size = 27688 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 16561
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 16561
Output IDAT size = 16561 bytes (11013 bytes decrease)
Output file size = 16639 bytes (11049 bytes = 39.91% decrease)
** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/SIMplyBee.Rcheck/vign_test/SIMplyBee/vignettes/E_Genomics_files/figure-html/view diagonal-2.png
288x288 pixels, 8 bits/pixel, 254 colors in palette
Reducing image to 8 bits/pixel, grayscale
Input IDAT size = 3922 bytes
Input file size = 4774 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 3433
zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 3423
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 3423
Output IDAT size = 3423 bytes (499 bytes decrease)
Output file size = 3501 bytes (1273 bytes = 26.67% decrease)
** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/SIMplyBee.Rcheck/vign_test/SIMplyBee/vignettes/E_Genomics_files/figure-html/view non-diagonal-1.png
288x288 pixels, 8 bits/pixel, 254 colors in palette
Reducing image to 8 bits/pixel, grayscale
Input IDAT size = 4136 bytes
Input file size = 4988 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 3655
zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 3654
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 3654
Output IDAT size = 3654 bytes (482 bytes decrease)
Output file size = 3732 bytes (1256 bytes = 25.18% decrease)
** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/SIMplyBee.Rcheck/vign_test/SIMplyBee/vignettes/E_Genomics_files/figure-html/Queen vs fathers 1-1.png
288x288 pixels, 8 bits/pixel, 256 colors in palette
Reducing image to 8 bits/pixel, grayscale
Input IDAT size = 5647 bytes
Input file size = 6505 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 5241
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 5241
Output IDAT size = 5241 bytes (406 bytes decrease)
Output file size = 5319 bytes (1186 bytes = 18.23% decrease)
** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/SIMplyBee.Rcheck/vign_test/SIMplyBee/vignettes/E_Genomics_files/figure-html/Queen vs workers 1-1.png
288x288 pixels, 8 bits/pixel, 256 colors in palette
Reducing image to 8 bits/pixel, grayscale
Input IDAT size = 6065 bytes
Input file size = 6923 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 5612
zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 5571
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 5571
Output IDAT size = 5571 bytes (494 bytes decrease)
Output file size = 5649 bytes (1274 bytes = 18.40% decrease)
** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/SIMplyBee.Rcheck/vign_test/SIMplyBee/vignettes/E_Genomics_files/figure-html/Queen vs drones 1-1.png
288x288 pixels, 8 bits/pixel, 256 colors in palette
Reducing image to 8 bits/pixel, grayscale
Input IDAT size = 5855 bytes
Input file size = 6713 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 5400
zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 5363
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 5363
Output IDAT size = 5363 bytes (492 bytes decrease)
Output file size = 5441 bytes (1272 bytes = 18.95% decrease)
** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/SIMplyBee.Rcheck/vign_test/SIMplyBee/vignettes/E_Genomics_files/figure-html/alleleFreq-1.png
288x288 pixels, 8 bits/pixel, 256 colors in palette
Reducing image to 8 bits/pixel, grayscale
Input IDAT size = 5392 bytes
Input file size = 6250 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 4993
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 4993
Output IDAT size = 4993 bytes (399 bytes decrease)
Output file size = 5071 bytes (1179 bytes = 18.86% decrease)
** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/SIMplyBee.Rcheck/vign_test/SIMplyBee/vignettes/E_Genomics_files/figure-html/view calcGRMIbd-1.png
288x288 pixels, 8 bits/pixel, 254 colors in palette
Reducing image to 8 bits/pixel, grayscale
Input IDAT size = 11123 bytes
Input file size = 11987 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 10628
zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 10117
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 10117
Output IDAT size = 10117 bytes (1006 bytes decrease)
Output file size = 10195 bytes (1792 bytes = 14.95% decrease)
** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/SIMplyBee.Rcheck/vign_test/SIMplyBee/vignettes/E_Genomics_files/figure-html/view calcGRMIbd-2.png
288x288 pixels, 8 bits/pixel, 255 colors in palette
Reducing image to 8 bits/pixel, grayscale
Input IDAT size = 13461 bytes
Input file size = 14328 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 13037
zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 12919
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 12919
Output IDAT size = 12919 bytes (542 bytes decrease)
Output file size = 12997 bytes (1331 bytes = 9.29% decrease)
** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/SIMplyBee.Rcheck/vign_test/SIMplyBee/vignettes/E_Genomics_files/figure-html/view non-diagonal1-1.png
288x288 pixels, 8 bits/pixel, 253 colors in palette
Reducing image to 8 bits/pixel, grayscale
Input IDAT size = 3908 bytes
Input file size = 4757 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 3469
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 3469
Output IDAT size = 3469 bytes (439 bytes decrease)
Output file size = 3547 bytes (1210 bytes = 25.44% decrease)
** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/SIMplyBee.Rcheck/vign_test/SIMplyBee/vignettes/E_Genomics_files/figure-html/view non-diagonal1-2.png
288x288 pixels, 8 bits/pixel, 252 colors in palette
Reducing image to 8 bits/pixel, grayscale
Input IDAT size = 3993 bytes
Input file size = 4839 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 3559
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 3559
Output IDAT size = 3559 bytes (434 bytes decrease)
Output file size = 3637 bytes (1202 bytes = 24.84% decrease)
** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/SIMplyBee.Rcheck/vign_test/SIMplyBee/vignettes/E_Genomics_files/figure-html/Queen vs fathers-1.png
288x288 pixels, 8 bits/pixel, 256 colors in palette
Reducing image to 8 bits/pixel, grayscale
Input IDAT size = 5336 bytes
Input file size = 6194 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 4884
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 4884
Output IDAT size = 4884 bytes (452 bytes decrease)
Output file size = 4962 bytes (1232 bytes = 19.89% decrease)
** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/SIMplyBee.Rcheck/vign_test/SIMplyBee/vignettes/E_Genomics_files/figure-html/Queen vs workers-1.png
288x288 pixels, 8 bits/pixel, 256 colors in palette
Reducing image to 8 bits/pixel, grayscale
Input IDAT size = 5470 bytes
Input file size = 6328 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 5046
zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 5033
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 5033
Output IDAT size = 5033 bytes (437 bytes decrease)
Output file size = 5111 bytes (1217 bytes = 19.23% decrease)
** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/SIMplyBee.Rcheck/vign_test/SIMplyBee/vignettes/E_Genomics_files/figure-html/Queen vs drones-1.png
288x288 pixels, 8 bits/pixel, 256 colors in palette
Reducing image to 8 bits/pixel, grayscale
Input IDAT size = 5338 bytes
Input file size = 6196 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 4921
zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 4920
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 4920
Output IDAT size = 4920 bytes (418 bytes decrease)
Output file size = 4998 bytes (1198 bytes = 19.34% decrease)
--- finished re-building ‘E_Genomics.Rmd’
--- re-building ‘F_Quantitative_Genetics.Rmd’ using rmarkdown
*** caught segfault ***
address 0xabd6e0dba40a10, cause 'memory not mapped'
*** stack smashing detected ***: terminated
Aborted
--- re-building ‘G_Sampling_functions.Rmd’ using rmarkdown
** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/SIMplyBee.Rcheck/vign_test/SIMplyBee/vignettes/G_Sampling_functions_files/figure-html/unnamed-chunk-3-1.png
576x288 pixels, 8 bits/pixel, 256 colors in palette
Reducing image to 8 bits/pixel, grayscale
Input IDAT size = 6429 bytes
Input file size = 7287 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 5783
zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 5774
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 5774
Output IDAT size = 5774 bytes (655 bytes decrease)
Output file size = 5852 bytes (1435 bytes = 19.69% decrease)
** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/SIMplyBee.Rcheck/vign_test/SIMplyBee/vignettes/G_Sampling_functions_files/figure-html/unnamed-chunk-6-1.png
288x288 pixels, 8 bits/pixel, 256 colors in palette
Reducing image to 8 bits/pixel, grayscale
Input IDAT size = 4140 bytes
Input file size = 4998 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 3665
zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 3662
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 3662
Output IDAT size = 3662 bytes (478 bytes decrease)
Output file size = 3740 bytes (1258 bytes = 25.17% decrease)
--- finished re-building ‘G_Sampling_functions.Rmd’
--- re-building ‘Z_FAQ.Rmd’ using rmarkdown
--- finished re-building ‘Z_FAQ.Rmd’
SUMMARY: processing the following file failed:
‘F_Quantitative_Genetics.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc