CRAN Package Check Results for Package SIMplyBee

Last updated on 2024-12-23 12:49:25 CET.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 0.4.1 27.48 158.23 185.71 OK
r-devel-linux-x86_64-debian-gcc 0.4.1 18.69 106.90 125.59 ERROR
r-devel-linux-x86_64-fedora-clang 0.4.1 333.02 OK
r-devel-linux-x86_64-fedora-gcc 0.4.1 316.91 OK
r-devel-windows-x86_64 0.4.1 31.00 211.00 242.00 OK
r-patched-linux-x86_64 0.4.1 28.10 158.96 187.06 OK
r-release-linux-x86_64 0.4.1 26.43 162.07 188.50 OK
r-release-macos-arm64 0.4.1 91.00 OK
r-release-macos-x86_64 0.4.1 186.00 OK
r-release-windows-x86_64 0.4.1 32.00 209.00 241.00 OK
r-oldrel-macos-arm64 0.4.1 107.00 OK
r-oldrel-macos-x86_64 0.4.1 188.00 OK
r-oldrel-windows-x86_64 0.4.1 38.00 260.00 298.00 OK

Check Details

Version: 0.4.1
Check: re-building of vignette outputs
Result: ERROR Error(s) in re-building vignettes: ... --- re-building ‘A_Honeybee_biology.Rmd’ using rmarkdown --- finished re-building ‘A_Honeybee_biology.Rmd’ --- re-building ‘B_Multiple_colonies.Rmd’ using rmarkdown --- finished re-building ‘B_Multiple_colonies.Rmd’ --- re-building ‘C_Colony_events.Rmd’ using rmarkdown --- finished re-building ‘C_Colony_events.Rmd’ --- re-building ‘D_Crossing.Rmd’ using rmarkdown ** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/SIMplyBee.Rcheck/vign_test/SIMplyBee/vignettes/D_Crossing_files/figure-html/unnamed-chunk-12-1.png 288x288 pixels, 3x8 bits/pixel, RGB Input IDAT size = 10148 bytes Input file size = 10238 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 7834 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 7834 Output IDAT size = 7834 bytes (2314 bytes decrease) Output file size = 7912 bytes (2326 bytes = 22.72% decrease) --- finished re-building ‘D_Crossing.Rmd’ --- re-building ‘E_Genomics.Rmd’ using rmarkdown ** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/SIMplyBee.Rcheck/vign_test/SIMplyBee/vignettes/E_Genomics_files/figure-html/plot genoQ with poolW-1.png 288x288 pixels, 8 bits/pixel, 256 colors in palette Reducing image to 8 bits/pixel, grayscale Input IDAT size = 8952 bytes Input file size = 9822 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 8461 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 8461 Output IDAT size = 8461 bytes (491 bytes decrease) Output file size = 8539 bytes (1283 bytes = 13.06% decrease) ** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/SIMplyBee.Rcheck/vign_test/SIMplyBee/vignettes/E_Genomics_files/figure-html/view diagonal-1.png 288x288 pixels, 3x8 bits/pixel, RGB Input IDAT size = 27574 bytes Input file size = 27688 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 16561 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 16561 Output IDAT size = 16561 bytes (11013 bytes decrease) Output file size = 16639 bytes (11049 bytes = 39.91% decrease) ** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/SIMplyBee.Rcheck/vign_test/SIMplyBee/vignettes/E_Genomics_files/figure-html/view diagonal-2.png 288x288 pixels, 8 bits/pixel, 254 colors in palette Reducing image to 8 bits/pixel, grayscale Input IDAT size = 3922 bytes Input file size = 4774 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 3433 zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 3423 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 3423 Output IDAT size = 3423 bytes (499 bytes decrease) Output file size = 3501 bytes (1273 bytes = 26.67% decrease) ** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/SIMplyBee.Rcheck/vign_test/SIMplyBee/vignettes/E_Genomics_files/figure-html/view non-diagonal-1.png 288x288 pixels, 8 bits/pixel, 254 colors in palette Reducing image to 8 bits/pixel, grayscale Input IDAT size = 4136 bytes Input file size = 4988 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 3655 zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 3654 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 3654 Output IDAT size = 3654 bytes (482 bytes decrease) Output file size = 3732 bytes (1256 bytes = 25.18% decrease) ** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/SIMplyBee.Rcheck/vign_test/SIMplyBee/vignettes/E_Genomics_files/figure-html/Queen vs fathers 1-1.png 288x288 pixels, 8 bits/pixel, 256 colors in palette Reducing image to 8 bits/pixel, grayscale Input IDAT size = 5647 bytes Input file size = 6505 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 5241 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 5241 Output IDAT size = 5241 bytes (406 bytes decrease) Output file size = 5319 bytes (1186 bytes = 18.23% decrease) ** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/SIMplyBee.Rcheck/vign_test/SIMplyBee/vignettes/E_Genomics_files/figure-html/Queen vs workers 1-1.png 288x288 pixels, 8 bits/pixel, 256 colors in palette Reducing image to 8 bits/pixel, grayscale Input IDAT size = 6065 bytes Input file size = 6923 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 5612 zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 5571 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 5571 Output IDAT size = 5571 bytes (494 bytes decrease) Output file size = 5649 bytes (1274 bytes = 18.40% decrease) ** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/SIMplyBee.Rcheck/vign_test/SIMplyBee/vignettes/E_Genomics_files/figure-html/Queen vs drones 1-1.png 288x288 pixels, 8 bits/pixel, 256 colors in palette Reducing image to 8 bits/pixel, grayscale Input IDAT size = 5855 bytes Input file size = 6713 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 5400 zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 5363 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 5363 Output IDAT size = 5363 bytes (492 bytes decrease) Output file size = 5441 bytes (1272 bytes = 18.95% decrease) ** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/SIMplyBee.Rcheck/vign_test/SIMplyBee/vignettes/E_Genomics_files/figure-html/alleleFreq-1.png 288x288 pixels, 8 bits/pixel, 256 colors in palette Reducing image to 8 bits/pixel, grayscale Input IDAT size = 5392 bytes Input file size = 6250 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 4993 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 4993 Output IDAT size = 4993 bytes (399 bytes decrease) Output file size = 5071 bytes (1179 bytes = 18.86% decrease) ** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/SIMplyBee.Rcheck/vign_test/SIMplyBee/vignettes/E_Genomics_files/figure-html/view calcGRMIbd-1.png 288x288 pixels, 8 bits/pixel, 254 colors in palette Reducing image to 8 bits/pixel, grayscale Input IDAT size = 11123 bytes Input file size = 11987 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 10628 zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 10117 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 10117 Output IDAT size = 10117 bytes (1006 bytes decrease) Output file size = 10195 bytes (1792 bytes = 14.95% decrease) ** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/SIMplyBee.Rcheck/vign_test/SIMplyBee/vignettes/E_Genomics_files/figure-html/view calcGRMIbd-2.png 288x288 pixels, 8 bits/pixel, 255 colors in palette Reducing image to 8 bits/pixel, grayscale Input IDAT size = 13461 bytes Input file size = 14328 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 13037 zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 12919 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 12919 Output IDAT size = 12919 bytes (542 bytes decrease) Output file size = 12997 bytes (1331 bytes = 9.29% decrease) ** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/SIMplyBee.Rcheck/vign_test/SIMplyBee/vignettes/E_Genomics_files/figure-html/view non-diagonal1-1.png 288x288 pixels, 8 bits/pixel, 253 colors in palette Reducing image to 8 bits/pixel, grayscale Input IDAT size = 3908 bytes Input file size = 4757 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 3469 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 3469 Output IDAT size = 3469 bytes (439 bytes decrease) Output file size = 3547 bytes (1210 bytes = 25.44% decrease) ** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/SIMplyBee.Rcheck/vign_test/SIMplyBee/vignettes/E_Genomics_files/figure-html/view non-diagonal1-2.png 288x288 pixels, 8 bits/pixel, 252 colors in palette Reducing image to 8 bits/pixel, grayscale Input IDAT size = 3993 bytes Input file size = 4839 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 3559 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 3559 Output IDAT size = 3559 bytes (434 bytes decrease) Output file size = 3637 bytes (1202 bytes = 24.84% decrease) ** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/SIMplyBee.Rcheck/vign_test/SIMplyBee/vignettes/E_Genomics_files/figure-html/Queen vs fathers-1.png 288x288 pixels, 8 bits/pixel, 256 colors in palette Reducing image to 8 bits/pixel, grayscale Input IDAT size = 5336 bytes Input file size = 6194 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 4884 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 4884 Output IDAT size = 4884 bytes (452 bytes decrease) Output file size = 4962 bytes (1232 bytes = 19.89% decrease) ** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/SIMplyBee.Rcheck/vign_test/SIMplyBee/vignettes/E_Genomics_files/figure-html/Queen vs workers-1.png 288x288 pixels, 8 bits/pixel, 256 colors in palette Reducing image to 8 bits/pixel, grayscale Input IDAT size = 5470 bytes Input file size = 6328 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 5046 zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 5033 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 5033 Output IDAT size = 5033 bytes (437 bytes decrease) Output file size = 5111 bytes (1217 bytes = 19.23% decrease) ** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/SIMplyBee.Rcheck/vign_test/SIMplyBee/vignettes/E_Genomics_files/figure-html/Queen vs drones-1.png 288x288 pixels, 8 bits/pixel, 256 colors in palette Reducing image to 8 bits/pixel, grayscale Input IDAT size = 5338 bytes Input file size = 6196 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 4921 zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 4920 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 4920 Output IDAT size = 4920 bytes (418 bytes decrease) Output file size = 4998 bytes (1198 bytes = 19.34% decrease) --- finished re-building ‘E_Genomics.Rmd’ --- re-building ‘F_Quantitative_Genetics.Rmd’ using rmarkdown *** caught segfault *** address 0xabd6e0dba40a10, cause 'memory not mapped' *** stack smashing detected ***: terminated Aborted --- re-building ‘G_Sampling_functions.Rmd’ using rmarkdown ** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/SIMplyBee.Rcheck/vign_test/SIMplyBee/vignettes/G_Sampling_functions_files/figure-html/unnamed-chunk-3-1.png 576x288 pixels, 8 bits/pixel, 256 colors in palette Reducing image to 8 bits/pixel, grayscale Input IDAT size = 6429 bytes Input file size = 7287 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 5783 zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 5774 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 5774 Output IDAT size = 5774 bytes (655 bytes decrease) Output file size = 5852 bytes (1435 bytes = 19.69% decrease) ** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/SIMplyBee.Rcheck/vign_test/SIMplyBee/vignettes/G_Sampling_functions_files/figure-html/unnamed-chunk-6-1.png 288x288 pixels, 8 bits/pixel, 256 colors in palette Reducing image to 8 bits/pixel, grayscale Input IDAT size = 4140 bytes Input file size = 4998 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 3665 zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 3662 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 3662 Output IDAT size = 3662 bytes (478 bytes decrease) Output file size = 3740 bytes (1258 bytes = 25.17% decrease) --- finished re-building ‘G_Sampling_functions.Rmd’ --- re-building ‘Z_FAQ.Rmd’ using rmarkdown --- finished re-building ‘Z_FAQ.Rmd’ SUMMARY: processing the following file failed: ‘F_Quantitative_Genetics.Rmd’ Error: Vignette re-building failed. Execution halted Flavor: r-devel-linux-x86_64-debian-gcc