Last updated on 2025-12-29 21:49:39 CET.
| Package | ERROR | NOTE | OK |
|---|---|---|---|
| miesmuschel | 13 | ||
| mlr | 2 | 11 | |
| mlr3pipelines | 3 | 10 | |
| paradox | 13 | ||
| ParamHelpers | 13 |
Current CRAN status: OK: 13
Current CRAN status: NOTE: 2, OK: 11
Version: 2.19.3
Check: package dependencies
Result: NOTE
Package suggested but not available for checking: ‘Rmpi’
Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64
Version: 2.19.3
Check: installed package size
Result: NOTE
installed size is 5.6Mb
sub-directories of 1Mb or more:
R 2.0Mb
data 2.3Mb
Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64
Current CRAN status: ERROR: 3, OK: 10
Version: 0.10.0
Check: examples
Result: ERROR
Running examples in ‘mlr3pipelines-Ex.R’ failed
The error most likely occurred in:
> ### Name: mlr_pipeops_nmf
> ### Title: Non-negative Matrix Factorization
> ### Aliases: mlr_pipeops_nmf PipeOpNMF
>
> ### ** Examples
>
> ## Don't show:
> if (mlr3misc::require_namespaces(c("NMF", "MASS"), quietly = TRUE)) withAutoprint({ # examplesIf
+ ## End(Don't show)
+ ## Don't show:
+ # NMF attaches these packages to search path on load, #929
+ lapply(c("package:Biobase", "package:BiocGenerics", "package:generics"), detach, character.only = TRUE)
+ ## End(Don't show)
+ library("mlr3")
+
+ task = tsk("iris")
+ pop = po("nmf")
+
+ task$data()
+ pop$train(list(task))[[1]]$data()
+
+ pop$state
+ ## Don't show:
+ # BiocGenerics overwrites printer for our tables mlr-org/mlr3#1112
+ # Necessary as detaching packages does not remove registered S3 methods
+ suppressWarnings(try(rm("format.list", envir = .BaseNamespaceEnv$.__S3MethodsTable__.), silent = TRUE))
+ ## End(Don't show)
+ ## Don't show:
+ }) # examplesIf
> lapply(c("package:Biobase", "package:BiocGenerics", "package:generics"),
+ detach, character.only = TRUE)
Error in FUN(X[[i]], ...) : invalid 'name' argument
Calls: withAutoprint ... withVisible -> eval -> eval -> lapply -> lapply -> FUN
Execution halted
Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64
Version: 0.10.0
Check: tests
Result: ERROR
Running ‘testthat.R’ [108s/53s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> if (requireNamespace("testthat", quietly = TRUE)) {
+ library("checkmate")
+ library("testthat")
+ library("mlr3")
+ library("paradox")
+ library("mlr3pipelines")
+ test_check("mlr3pipelines")
+ }
Starting 2 test processes.
> test_Graph.R: Training debug.multi with input list(input_1 = 1, input_2 = 1)
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_filter_ensemble.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_mlr_graphs_robustify.R: 'as(<dgCMatrix>, "dgTMatrix")' is deprecated.
> test_mlr_graphs_robustify.R: Use 'as(., "TsparseMatrix")' instead.
> test_mlr_graphs_robustify.R: See help("Deprecated") and help("Matrix-deprecated").
> test_multiplicities.R:
> test_multiplicities.R: [[1]]
> test_multiplicities.R: [1] 0
> test_multiplicities.R:
> test_multiplicities.R:
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
Saving _problems/test_pipeop_datefeatures-7.R
Saving _problems/test_pipeop_datefeatures-17.R
> test_pipeop_isomap.R: 2025-12-30 07:56:12.339948: Isomap START
> test_pipeop_isomap.R: 2025-12-30 07:56:12.3402: constructing knn graph
> test_pipeop_isomap.R: 2025-12-30 07:56:12.343195: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-30 07:56:12.349355: Classical Scaling
> test_pipeop_isomap.R: 2025-12-30 07:56:12.360243: Isomap START
> test_pipeop_isomap.R: 2025-12-30 07:56:12.360356: constructing knn graph
> test_pipeop_isomap.R: 2025-12-30 07:56:12.362577: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-30 07:56:12.368637: Classical Scaling
> test_pipeop_isomap.R: 2025-12-30 07:56:12.375948: L-Isomap embed START
> test_pipeop_isomap.R: 2025-12-30 07:56:12.376115: constructing knn graph
> test_pipeop_isomap.R: 2025-12-30 07:56:12.389871: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-30 07:56:12.404678: embedding
> test_pipeop_isomap.R: 2025-12-30 07:56:12.405025: DONE
> test_pipeop_isomap.R: 2025-12-30 07:56:12.411102: L-Isomap embed START
> test_pipeop_isomap.R: 2025-12-30 07:56:12.411209: constructing knn graph
> test_pipeop_isomap.R: 2025-12-30 07:56:12.415531: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-30 07:56:12.430802: embedding
> test_pipeop_isomap.R: 2025-12-30 07:56:12.431173: DONE
> test_pipeop_isomap.R: 2025-12-30 07:56:12.450735: Isomap START
> test_pipeop_isomap.R: 2025-12-30 07:56:12.450867: constructing knn graph
> test_pipeop_isomap.R: 2025-12-30 07:56:12.455466: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-30 07:56:12.490008: Classical Scaling
> test_pipeop_isomap.R: 2025-12-30 07:56:12.499547: L-Isomap embed START
> test_pipeop_isomap.R: 2025-12-30 07:56:12.499758: constructing knn graph
> test_pipeop_isomap.R: 2025-12-30 07:56:12.513735: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-30 07:56:12.593297: embedding
> test_pipeop_isomap.R: 2025-12-30 07:56:12.59433: DONE
> test_pipeop_isomap.R: 2025-12-30 07:56:12.627861: Isomap START
> test_pipeop_isomap.R: 2025-12-30 07:56:12.628038: constructing knn graph
> test_pipeop_isomap.R: 2025-12-30 07:56:12.630517: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-30 07:56:12.636911: Classical Scaling
> test_pipeop_isomap.R: 2025-12-30 07:56:12.644665: L-Isomap embed START
> test_pipeop_isomap.R: 2025-12-30 07:56:12.644828: constructing knn graph
> test_pipeop_isomap.R: 2025-12-30 07:56:12.649665: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-30 07:56:12.665217: embedding
> test_pipeop_isomap.R: 2025-12-30 07:56:12.66566: DONE
> test_pipeop_isomap.R: 2025-12-30 07:56:12.703644: Isomap START
> test_pipeop_isomap.R: 2025-12-30 07:56:12.703764: constructing knn graph
> test_pipeop_isomap.R: 2025-12-30 07:56:12.705731: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-30 07:56:12.712164: Classical Scaling
> test_pipeop_isomap.R: 2025-12-30 07:56:12.723181: L-Isomap embed START
> test_pipeop_isomap.R: 2025-12-30 07:56:12.723384: constructing knn graph
> test_pipeop_isomap.R: 2025-12-30 07:56:12.727977: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-30 07:56:12.743482: embedding
> test_pipeop_isomap.R: 2025-12-30 07:56:12.743857: DONE
> test_pipeop_isomap.R: 2025-12-30 07:56:12.761974: Isomap START
> test_pipeop_isomap.R: 2025-12-30 07:56:12.762094: constructing knn graph
> test_pipeop_isomap.R: 2025-12-30 07:56:12.764303: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-30 07:56:12.770524: Classical Scaling
> test_pipeop_isomap.R: 2025-12-30 07:56:12.783352: L-Isomap embed START
> test_pipeop_isomap.R: 2025-12-30 07:56:12.783585: constructing knn graph
> test_pipeop_isomap.R: 2025-12-30 07:56:12.7885: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-30 07:56:12.803246: embedding
> test_pipeop_isomap.R: 2025-12-30 07:56:12.8036: DONE
> test_pipeop_isomap.R: 2025-12-30 07:56:12.827477: Isomap START
> test_pipeop_isomap.R: 2025-12-30 07:56:12.827613: constructing knn graph
> test_pipeop_isomap.R: 2025-12-30 07:56:12.829891: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-30 07:56:12.836139: Classical Scaling
> test_pipeop_isomap.R: 2025-12-30 07:56:12.848399: L-Isomap embed START
> test_pipeop_isomap.R: 2025-12-30 07:56:12.848587: constructing knn graph
> test_pipeop_isomap.R: 2025-12-30 07:56:12.853247: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-30 07:56:12.867893: embedding
> test_pipeop_isomap.R: 2025-12-30 07:56:12.868306: DONE
> test_pipeop_isomap.R: 2025-12-30 07:56:12.886041: Isomap START
> test_pipeop_isomap.R: 2025-12-30 07:56:12.886152: constructing knn graph
> test_pipeop_isomap.R: 2025-12-30 07:56:12.888322: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-30 07:56:12.89449: Classical Scaling
> test_pipeop_isomap.R: 2025-12-30 07:56:12.905143: L-Isomap embed START
> test_pipeop_isomap.R: 2025-12-30 07:56:12.905307: constructing knn graph
> test_pipeop_isomap.R: 2025-12-30 07:56:12.915013: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-30 07:56:12.930445: embedding
> test_pipeop_isomap.R: 2025-12-30 07:56:12.930835: DONE
> test_pipeop_isomap.R: 2025-12-30 07:56:12.949628: Isomap START
> test_pipeop_isomap.R: 2025-12-30 07:56:12.94975: constructing knn graph
> test_pipeop_isomap.R: 2025-12-30 07:56:12.951958: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-30 07:56:12.958085: Classical Scaling
> test_pipeop_isomap.R: 2025-12-30 07:56:12.974681: Isomap START
> test_pipeop_isomap.R: 2025-12-30 07:56:12.974822: constructing knn graph
> test_pipeop_isomap.R: 2025-12-30 07:56:12.977011: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-30 07:56:12.983094: Classical Scaling
> test_pipeop_isomap.R: 2025-12-30 07:56:12.988383: Isomap START
> test_pipeop_isomap.R: 2025-12-30 07:56:12.98849: constructing knn graph
> test_pipeop_isomap.R: 2025-12-30 07:56:12.990547: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-30 07:56:12.996698: Classical Scaling
Saving _problems/test_pipeop_nmf-45.R
Saving _problems/test_pipeop_nmf-73.R
Saving _problems/test_pipeop_nmf-93.R
Saving _problems/test_pipeop_nmf-98.R
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_textvectorizer.R: 'as(<dgCMatrix>, "dgTMatrix")' is deprecated.
> test_pipeop_textvectorizer.R: Use 'as(., "TsparseMatrix")' instead.
> test_pipeop_textvectorizer.R: See help("Deprecated") and help("Matrix-deprecated").
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
[ FAIL 6 | WARN 0 | SKIP 99 | PASS 13006 ]
══ Skipped tests (99) ══════════════════════════════════════════════════════════
• On CRAN (95): 'test_CnfFormula_simplify.R:6:3', 'test_CnfFormula.R:591:3',
'test_Graph.R:283:3', 'test_PipeOp.R:32:1', 'test_GraphLearner.R:5:3',
'test_GraphLearner.R:221:3', 'test_GraphLearner.R:343:3',
'test_GraphLearner.R:408:3', 'test_GraphLearner.R:571:3',
'test_dictionary.R:7:3', 'test_learner_weightedaverage.R:5:3',
'test_learner_weightedaverage.R:57:3',
'test_learner_weightedaverage.R:105:3',
'test_learner_weightedaverage.R:152:3', 'test_meta.R:39:3',
'test_mlr_graphs_branching.R:26:3', 'test_mlr_graphs_bagging.R:6:3',
'test_mlr_graphs_robustify.R:5:3', 'test_pipeop_adas.R:8:3',
'test_pipeop_blsmote.R:8:3', 'test_pipeop_branch.R:4:3',
'test_pipeop_chunk.R:4:3', 'test_pipeop_classbalancing.R:7:3',
'test_pipeop_boxcox.R:7:3', 'test_pipeop_classweights.R:10:3',
'test_pipeop_collapsefactors.R:6:3', 'test_pipeop_colapply.R:9:3',
'test_pipeop_copy.R:5:3', 'test_pipeop_colroles.R:6:3',
'test_pipeop_decode.R:14:3', 'test_pipeop_encode.R:21:3',
'test_pipeop_encodeimpact.R:11:3', 'test_pipeop_encodelmer.R:15:3',
'test_pipeop_encodelmer.R:37:3', 'test_pipeop_encodelmer.R:80:3',
'test_pipeop_encodepl.R:5:3', 'test_pipeop_encodepl.R:72:3',
'test_pipeop_featureunion.R:9:3', 'test_pipeop_featureunion.R:134:3',
'test_pipeop_ensemble.R:6:3', 'test_pipeop_fixfactors.R:9:3',
'test_pipeop_histbin.R:7:3', 'test_pipeop_filter.R:7:3',
'test_pipeop_ica.R:7:3', 'test_pipeop_impute.R:4:3',
'test_pipeop_imputelearner.R:43:3', 'test_pipeop_isomap.R:10:3',
'test_pipeop_kernelpca.R:9:3', 'test_pipeop_learner.R:17:3',
'test_pipeop_info.R:6:3', 'test_pipeop_learnerpicvplus.R:163:3',
'test_pipeop_missind.R:6:3', 'test_pipeop_modelmatrix.R:7:3',
'test_pipeop_multiplicityexply.R:9:3', 'test_pipeop_multiplicityimply.R:9:3',
'test_pipeop_mutate.R:9:3', 'test_pipeop_nearmiss.R:7:3',
'test_pipeop_learnercv.R:31:3', 'test_pipeop_ovr.R:9:3',
'test_pipeop_ovr.R:48:3', 'test_pipeop_pca.R:8:3',
'test_pipeop_proxy.R:14:3', 'test_pipeop_quantilebin.R:5:3',
'test_pipeop_randomprojection.R:6:3', 'test_pipeop_randomresponse.R:5:3',
'test_pipeop_nmf.R:6:3', 'test_pipeop_removeconstants.R:6:3',
'test_pipeop_renamecolumns.R:6:3', 'test_pipeop_replicate.R:9:3',
'test_pipeop_scale.R:6:3', 'test_pipeop_scale.R:10:3',
'test_pipeop_scalemaxabs.R:6:3', 'test_pipeop_scalerange.R:7:3',
'test_pipeop_select.R:9:3', 'test_pipeop_smote.R:10:3',
'test_pipeop_rowapply.R:6:3', 'test_pipeop_smotenc.R:8:3',
'test_pipeop_subsample.R:6:3', 'test_pipeop_targetinvert.R:4:3',
'test_pipeop_targetmutate.R:5:3', 'test_pipeop_targettrafo.R:4:3',
'test_pipeop_targettrafoscalerange.R:5:3', 'test_pipeop_task_preproc.R:4:3',
'test_pipeop_task_preproc.R:14:3', 'test_pipeop_spatialsign.R:6:3',
'test_pipeop_tomek.R:7:3', 'test_pipeop_textvectorizer.R:37:3',
'test_pipeop_textvectorizer.R:186:3', 'test_pipeop_unbranch.R:10:3',
'test_pipeop_updatetarget.R:89:3', 'test_pipeop_vtreat.R:9:3',
'test_pipeop_yeojohnson.R:7:3', 'test_pipeop_tunethreshold.R:111:3',
'test_pipeop_tunethreshold.R:191:3', 'test_typecheck.R:188:3'
• Skipping (1): 'test_GraphLearner.R:1278:3'
• empty test (3): 'test_pipeop_isomap.R:111:1', 'test_pipeop_missind.R:101:1',
'test_ppl.R:61:1'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test_pipeop_datefeatures.R:7:3'): PipeOpDateFeatures - basic properties ──
Error in `seq.Date(as.Date("2020-01-31"), length.out = 150L)`: exactly two of 'to', 'by' and 'length.out' / 'along.with' must be specified
Backtrace:
▆
1. ├─base::seq(as.Date("2020-01-31"), length.out = 150L) at test_pipeop_datefeatures.R:7:3
2. └─base::seq.Date(as.Date("2020-01-31"), length.out = 150L)
── Error ('test_pipeop_datefeatures.R:17:3'): PipeOpDateFeatures - finds POSIXct column ──
Error in `seq.Date(as.Date("2020-01-31"), length.out = 150L)`: exactly two of 'to', 'by' and 'length.out' / 'along.with' must be specified
Backtrace:
▆
1. ├─base::seq(as.Date("2020-01-31"), length.out = 150L) at test_pipeop_datefeatures.R:17:3
2. └─base::seq.Date(as.Date("2020-01-31"), length.out = 150L)
── Error ('test_pipeop_nmf.R:45:3'): PipeOpNMF - does not modify search path when NMF is not loaded, fix for #929 ──
Error in `detach(package:generics)`: invalid 'name' argument
Backtrace:
▆
1. └─base::detach(package:generics) at test_pipeop_nmf.R:45:3
── Failure ('test_pipeop_nmf.R:73:3'): PipeOpNMF - does not modify search path when NMF is loaded, fix for #929 ──
Expected `all(...)` to be TRUE.
Differences:
`actual`: FALSE
`expected`: TRUE
── Failure ('test_pipeop_nmf.R:93:3'): PipeOpNMF - does not modify search path when some of NMF's dependencies are loaded, fix for #929 ──
Expected `all(paste0("package:", c("BiocGenerics", "generics")) %in% search())` to be TRUE.
Differences:
`actual`: FALSE
`expected`: TRUE
── Error ('test_pipeop_nmf.R:98:3'): PipeOpNMF - does not modify search path when some of NMF's dependencies are loaded, fix for #929 ──
Error in `FUN(X[[i]], ...)`: invalid 'name' argument
This happened in PipeOp nmf's $train()
Backtrace:
▆
1. ├─op$train(list(tsk("iris"))) at test_pipeop_nmf.R:98:3
2. │ └─mlr3pipelines:::.__PipeOp__train(...)
3. │ ├─base::withCallingHandlers(...)
4. │ └─private$.train(input)
5. │ └─mlr3pipelines:::.__PipeOpTaskPreproc__.train(...)
6. │ └─private$.train_task(intask)
7. │ └─mlr3pipelines:::.__PipeOpTaskPreproc__.train_task(...)
8. │ ├─data.table::as.data.table(...)
9. │ └─private$.train_dt(dt, task$levels(cols), task$truth())
10. │ └─mlr3pipelines:::.__PipeOpNMF__.train_dt(...)
11. │ └─mlr3misc::map(to_be_detached, detach, character.only = TRUE)
12. │ └─base::lapply(.x, .f, ...)
13. │ └─base (local) FUN(X[[i]], ...)
14. │ └─base::stop("invalid 'name' argument")
15. └─base::.handleSimpleError(...)
16. └─mlr3pipelines (local) h(simpleError(msg, call))
[ FAIL 6 | WARN 0 | SKIP 99 | PASS 13006 ]
Error:
! Test failures.
Execution halted
Flavor: r-oldrel-macos-arm64
Version: 0.10.0
Check: tests
Result: ERROR
Running ‘testthat.R’ [323s/352s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> if (requireNamespace("testthat", quietly = TRUE)) {
+ library("checkmate")
+ library("testthat")
+ library("mlr3")
+ library("paradox")
+ library("mlr3pipelines")
+ test_check("mlr3pipelines")
+ }
Starting 2 test processes.
> test_Graph.R: Training debug.multi with input list(input_1 = 1, input_2 = 1)
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_filter_ensemble.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_mlr_graphs_robustify.R: 'as(<dgCMatrix>, "dgTMatrix")' is deprecated.
> test_mlr_graphs_robustify.R: Use 'as(., "TsparseMatrix")' instead.
> test_mlr_graphs_robustify.R: See help("Deprecated") and help("Matrix-deprecated").
> test_multiplicities.R:
> test_multiplicities.R: [[1]]
> test_multiplicities.R: [1] 0
> test_multiplicities.R:
> test_multiplicities.R:
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
Saving _problems/test_pipeop_datefeatures-7.R
Saving _problems/test_pipeop_datefeatures-17.R
> test_pipeop_isomap.R: 2025-12-29 12:54:13.028423: Isomap START
> test_pipeop_isomap.R: 2025-12-29 12:54:13.028941: constructing knn graph
> test_pipeop_isomap.R: 2025-12-29 12:54:13.03773: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-29 12:54:13.076649: Classical Scaling
> test_pipeop_isomap.R: 2025-12-29 12:54:13.116268: Isomap START
> test_pipeop_isomap.R: 2025-12-29 12:54:13.116636: constructing knn graph
> test_pipeop_isomap.R: 2025-12-29 12:54:13.133518: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-29 12:54:13.152378: Classical Scaling
> test_pipeop_isomap.R: 2025-12-29 12:54:13.195632: L-Isomap embed START
> test_pipeop_isomap.R: 2025-12-29 12:54:13.196064: constructing knn graph
> test_pipeop_isomap.R: 2025-12-29 12:54:13.218757: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-29 12:54:13.280295: embedding
> test_pipeop_isomap.R: 2025-12-29 12:54:13.281516: DONE
> test_pipeop_isomap.R: 2025-12-29 12:54:13.309226: L-Isomap embed START
> test_pipeop_isomap.R: 2025-12-29 12:54:13.309534: constructing knn graph
> test_pipeop_isomap.R: 2025-12-29 12:54:13.341526: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-29 12:54:13.392769: embedding
> test_pipeop_isomap.R: 2025-12-29 12:54:13.399983: DONE
> test_pipeop_isomap.R: 2025-12-29 12:54:13.530761: Isomap START
> test_pipeop_isomap.R: 2025-12-29 12:54:13.532034: constructing knn graph
> test_pipeop_isomap.R: 2025-12-29 12:54:13.555025: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-29 12:54:13.668814: Classical Scaling
> test_pipeop_isomap.R: 2025-12-29 12:54:13.695516: L-Isomap embed START
> test_pipeop_isomap.R: 2025-12-29 12:54:13.69601: constructing knn graph
> test_pipeop_isomap.R: 2025-12-29 12:54:13.729093: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-29 12:54:14.013777: embedding
> test_pipeop_isomap.R: 2025-12-29 12:54:14.017325: DONE
> test_pipeop_isomap.R: 2025-12-29 12:54:14.177246: Isomap START
> test_pipeop_isomap.R: 2025-12-29 12:54:14.177515: constructing knn graph
> test_pipeop_isomap.R: 2025-12-29 12:54:14.184081: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-29 12:54:14.203132: Classical Scaling
> test_pipeop_isomap.R: 2025-12-29 12:54:14.233747: L-Isomap embed START
> test_pipeop_isomap.R: 2025-12-29 12:54:14.234572: constructing knn graph
> test_pipeop_isomap.R: 2025-12-29 12:54:14.252865: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-29 12:54:14.293416: embedding
> test_pipeop_isomap.R: 2025-12-29 12:54:14.294529: DONE
> test_pipeop_isomap.R: 2025-12-29 12:54:14.431573: Isomap START
> test_pipeop_isomap.R: 2025-12-29 12:54:14.431861: constructing knn graph
> test_pipeop_isomap.R: 2025-12-29 12:54:14.440035: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-29 12:54:14.482838: Classical Scaling
> test_pipeop_isomap.R: 2025-12-29 12:54:14.535847: L-Isomap embed START
> test_pipeop_isomap.R: 2025-12-29 12:54:14.536274: constructing knn graph
> test_pipeop_isomap.R: 2025-12-29 12:54:14.628396: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-29 12:54:14.677116: embedding
> test_pipeop_isomap.R: 2025-12-29 12:54:14.678592: DONE
> test_pipeop_isomap.R: 2025-12-29 12:54:14.791864: Isomap START
> test_pipeop_isomap.R: 2025-12-29 12:54:14.792167: constructing knn graph
> test_pipeop_isomap.R: 2025-12-29 12:54:14.801319: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-29 12:54:14.827097: Classical Scaling
> test_pipeop_isomap.R: 2025-12-29 12:54:14.868877: L-Isomap embed START
> test_pipeop_isomap.R: 2025-12-29 12:54:14.869307: constructing knn graph
> test_pipeop_isomap.R: 2025-12-29 12:54:14.883475: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-29 12:54:14.93494: embedding
> test_pipeop_isomap.R: 2025-12-29 12:54:14.93604: DONE
> test_pipeop_isomap.R: 2025-12-29 12:54:15.045766: Isomap START
> test_pipeop_isomap.R: 2025-12-29 12:54:15.048923: constructing knn graph
> test_pipeop_isomap.R: 2025-12-29 12:54:15.056095: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-29 12:54:15.075531: Classical Scaling
> test_pipeop_isomap.R: 2025-12-29 12:54:15.120607: L-Isomap embed START
> test_pipeop_isomap.R: 2025-12-29 12:54:15.121224: constructing knn graph
> test_pipeop_isomap.R: 2025-12-29 12:54:15.137873: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-29 12:54:15.181706: embedding
> test_pipeop_isomap.R: 2025-12-29 12:54:15.182814: DONE
> test_pipeop_isomap.R: 2025-12-29 12:54:15.259038: Isomap START
> test_pipeop_isomap.R: 2025-12-29 12:54:15.259332: constructing knn graph
> test_pipeop_isomap.R: 2025-12-29 12:54:15.265966: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-29 12:54:15.294213: Classical Scaling
> test_pipeop_isomap.R: 2025-12-29 12:54:15.353764: L-Isomap embed START
> test_pipeop_isomap.R: 2025-12-29 12:54:15.354396: constructing knn graph
> test_pipeop_isomap.R: 2025-12-29 12:54:15.377471: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-29 12:54:15.429492: embedding
> test_pipeop_isomap.R: 2025-12-29 12:54:15.431261: DONE
> test_pipeop_isomap.R: 2025-12-29 12:54:15.534886: Isomap START
> test_pipeop_isomap.R: 2025-12-29 12:54:15.535172: constructing knn graph
> test_pipeop_isomap.R: 2025-12-29 12:54:15.575398: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-29 12:54:15.600601: Classical Scaling
> test_pipeop_isomap.R: 2025-12-29 12:54:15.66493: Isomap START
> test_pipeop_isomap.R: 2025-12-29 12:54:15.66536: constructing knn graph
> test_pipeop_isomap.R: 2025-12-29 12:54:15.674391: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-29 12:54:15.692766: Classical Scaling
> test_pipeop_isomap.R: 2025-12-29 12:54:15.712449: Isomap START
> test_pipeop_isomap.R: 2025-12-29 12:54:15.71277: constructing knn graph
> test_pipeop_isomap.R: 2025-12-29 12:54:15.719794: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-29 12:54:15.754491: Classical Scaling
Saving _problems/test_pipeop_nmf-45.R
Saving _problems/test_pipeop_nmf-73.R
Saving _problems/test_pipeop_nmf-93.R
Saving _problems/test_pipeop_nmf-98.R
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
[ FAIL 6 | WARN 0 | SKIP 99 | PASS 13006 ]
══ Skipped tests (99) ══════════════════════════════════════════════════════════
• On CRAN (95): 'test_CnfFormula_simplify.R:6:3', 'test_CnfFormula.R:591:3',
'test_Graph.R:283:3', 'test_PipeOp.R:32:1', 'test_GraphLearner.R:5:3',
'test_GraphLearner.R:221:3', 'test_GraphLearner.R:343:3',
'test_GraphLearner.R:408:3', 'test_GraphLearner.R:571:3',
'test_dictionary.R:7:3', 'test_learner_weightedaverage.R:5:3',
'test_learner_weightedaverage.R:57:3',
'test_learner_weightedaverage.R:105:3',
'test_learner_weightedaverage.R:152:3', 'test_meta.R:39:3',
'test_mlr_graphs_branching.R:26:3', 'test_mlr_graphs_bagging.R:6:3',
'test_mlr_graphs_robustify.R:5:3', 'test_pipeop_adas.R:8:3',
'test_pipeop_blsmote.R:8:3', 'test_pipeop_branch.R:4:3',
'test_pipeop_chunk.R:4:3', 'test_pipeop_classbalancing.R:7:3',
'test_pipeop_boxcox.R:7:3', 'test_pipeop_classweights.R:10:3',
'test_pipeop_colapply.R:9:3', 'test_pipeop_collapsefactors.R:6:3',
'test_pipeop_copy.R:5:3', 'test_pipeop_colroles.R:6:3',
'test_pipeop_decode.R:14:3', 'test_pipeop_encode.R:21:3',
'test_pipeop_encodeimpact.R:11:3', 'test_pipeop_encodepl.R:5:3',
'test_pipeop_encodepl.R:72:3', 'test_pipeop_encodelmer.R:15:3',
'test_pipeop_encodelmer.R:37:3', 'test_pipeop_encodelmer.R:80:3',
'test_pipeop_featureunion.R:9:3', 'test_pipeop_featureunion.R:134:3',
'test_pipeop_filter.R:7:3', 'test_pipeop_fixfactors.R:9:3',
'test_pipeop_histbin.R:7:3', 'test_pipeop_ica.R:7:3',
'test_pipeop_impute.R:4:3', 'test_pipeop_ensemble.R:6:3',
'test_pipeop_imputelearner.R:43:3', 'test_pipeop_isomap.R:10:3',
'test_pipeop_kernelpca.R:9:3', 'test_pipeop_learner.R:17:3',
'test_pipeop_info.R:6:3', 'test_pipeop_learnerpicvplus.R:163:3',
'test_pipeop_missind.R:6:3', 'test_pipeop_modelmatrix.R:7:3',
'test_pipeop_multiplicityexply.R:9:3', 'test_pipeop_multiplicityimply.R:9:3',
'test_pipeop_mutate.R:9:3', 'test_pipeop_nearmiss.R:7:3',
'test_pipeop_learnercv.R:31:3', 'test_pipeop_ovr.R:9:3',
'test_pipeop_ovr.R:48:3', 'test_pipeop_pca.R:8:3',
'test_pipeop_proxy.R:14:3', 'test_pipeop_quantilebin.R:5:3',
'test_pipeop_randomprojection.R:6:3', 'test_pipeop_nmf.R:6:3',
'test_pipeop_randomresponse.R:5:3', 'test_pipeop_removeconstants.R:6:3',
'test_pipeop_renamecolumns.R:6:3', 'test_pipeop_replicate.R:9:3',
'test_pipeop_scale.R:6:3', 'test_pipeop_scale.R:10:3',
'test_pipeop_scalemaxabs.R:6:3', 'test_pipeop_scalerange.R:7:3',
'test_pipeop_select.R:9:3', 'test_pipeop_smote.R:10:3',
'test_pipeop_smotenc.R:8:3', 'test_pipeop_rowapply.R:6:3',
'test_pipeop_subsample.R:6:3', 'test_pipeop_targetinvert.R:4:3',
'test_pipeop_targetmutate.R:5:3', 'test_pipeop_targettrafo.R:4:3',
'test_pipeop_targettrafoscalerange.R:5:3', 'test_pipeop_task_preproc.R:4:3',
'test_pipeop_task_preproc.R:14:3', 'test_pipeop_spatialsign.R:6:3',
'test_pipeop_tomek.R:7:3', 'test_pipeop_textvectorizer.R:37:3',
'test_pipeop_textvectorizer.R:186:3', 'test_pipeop_unbranch.R:10:3',
'test_pipeop_updatetarget.R:89:3', 'test_pipeop_vtreat.R:9:3',
'test_pipeop_yeojohnson.R:7:3', 'test_pipeop_tunethreshold.R:111:3',
'test_pipeop_tunethreshold.R:191:3', 'test_typecheck.R:188:3'
• Skipping (1): 'test_GraphLearner.R:1278:3'
• empty test (3): 'test_pipeop_isomap.R:111:1', 'test_pipeop_missind.R:101:1',
'test_ppl.R:61:1'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test_pipeop_datefeatures.R:7:3'): PipeOpDateFeatures - basic properties ──
Error in `seq.Date(as.Date("2020-01-31"), length.out = 150L)`: exactly two of 'to', 'by' and 'length.out' / 'along.with' must be specified
Backtrace:
▆
1. ├─base::seq(as.Date("2020-01-31"), length.out = 150L) at test_pipeop_datefeatures.R:7:3
2. └─base::seq.Date(as.Date("2020-01-31"), length.out = 150L)
── Error ('test_pipeop_datefeatures.R:17:3'): PipeOpDateFeatures - finds POSIXct column ──
Error in `seq.Date(as.Date("2020-01-31"), length.out = 150L)`: exactly two of 'to', 'by' and 'length.out' / 'along.with' must be specified
Backtrace:
▆
1. ├─base::seq(as.Date("2020-01-31"), length.out = 150L) at test_pipeop_datefeatures.R:17:3
2. └─base::seq.Date(as.Date("2020-01-31"), length.out = 150L)
── Error ('test_pipeop_nmf.R:45:3'): PipeOpNMF - does not modify search path when NMF is not loaded, fix for #929 ──
Error in `detach(package:generics)`: invalid 'name' argument
Backtrace:
▆
1. └─base::detach(package:generics) at test_pipeop_nmf.R:45:3
── Failure ('test_pipeop_nmf.R:73:3'): PipeOpNMF - does not modify search path when NMF is loaded, fix for #929 ──
Expected `all(...)` to be TRUE.
Differences:
`actual`: FALSE
`expected`: TRUE
── Failure ('test_pipeop_nmf.R:93:3'): PipeOpNMF - does not modify search path when some of NMF's dependencies are loaded, fix for #929 ──
Expected `all(paste0("package:", c("BiocGenerics", "generics")) %in% search())` to be TRUE.
Differences:
`actual`: FALSE
`expected`: TRUE
── Error ('test_pipeop_nmf.R:98:3'): PipeOpNMF - does not modify search path when some of NMF's dependencies are loaded, fix for #929 ──
Error in `FUN(X[[i]], ...)`: invalid 'name' argument
This happened in PipeOp nmf's $train()
Backtrace:
▆
1. ├─op$train(list(tsk("iris"))) at test_pipeop_nmf.R:98:3
2. │ └─mlr3pipelines:::.__PipeOp__train(...)
3. │ ├─base::withCallingHandlers(...)
4. │ └─private$.train(input)
5. │ └─mlr3pipelines:::.__PipeOpTaskPreproc__.train(...)
6. │ └─private$.train_task(intask)
7. │ └─mlr3pipelines:::.__PipeOpTaskPreproc__.train_task(...)
8. │ ├─data.table::as.data.table(...)
9. │ └─private$.train_dt(dt, task$levels(cols), task$truth())
10. │ └─mlr3pipelines:::.__PipeOpNMF__.train_dt(...)
11. │ └─mlr3misc::map(to_be_detached, detach, character.only = TRUE)
12. │ └─base::lapply(.x, .f, ...)
13. │ └─base (local) FUN(X[[i]], ...)
14. │ └─base::stop("invalid 'name' argument")
15. └─base::.handleSimpleError(...)
16. └─mlr3pipelines (local) h(simpleError(msg, call))
[ FAIL 6 | WARN 0 | SKIP 99 | PASS 13006 ]
Error:
! Test failures.
Execution halted
Flavor: r-oldrel-macos-x86_64
Version: 0.10.0
Check: tests
Result: ERROR
Running 'testthat.R' [281s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
> if (requireNamespace("testthat", quietly = TRUE)) {
+ library("checkmate")
+ library("testthat")
+ library("mlr3")
+ library("paradox")
+ library("mlr3pipelines")
+ test_check("mlr3pipelines")
+ }
Starting 2 test processes.
> test_Graph.R: Training debug.multi with input list(input_1 = 1, input_2 = 1)
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R:
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_filter_ensemble.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_mlr_graphs_robustify.R: 'as(<dgCMatrix>, "dgTMatrix")' is deprecated.
> test_mlr_graphs_robustify.R: Use 'as(., "TsparseMatrix")' instead.
> test_mlr_graphs_robustify.R: See help("Deprecated") and help("Matrix-deprecated").
> test_multiplicities.R:
> test_multiplicities.R: [[1]]
> test_multiplicities.R:
> test_multiplicities.R: [1] 0
> test_multiplicities.R:
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
Saving _problems/test_pipeop_datefeatures-7.R
Saving _problems/test_pipeop_datefeatures-17.R
> test_pipeop_isomap.R: 2025-12-29 16:43:04.894884: Isomap START
> test_pipeop_isomap.R: 2025-12-29 16:43:04.895979: constructing knn graph
> test_pipeop_isomap.R: 2025-12-29 16:43:04.911432: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-29 16:43:04.929833: Classical Scaling
> test_pipeop_isomap.R: 2025-12-29 16:43:04.977726: Isomap START
> test_pipeop_isomap.R: 2025-12-29 16:43:04.978196: constructing knn graph
> test_pipeop_isomap.R: 2025-12-29 16:43:04.988201: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-29 16:43:05.009231: Classical Scaling
> test_pipeop_isomap.R: 2025-12-29 16:43:05.039689: L-Isomap embed START
> test_pipeop_isomap.R: 2025-12-29 16:43:05.040373: constructing knn graph
> test_pipeop_isomap.R: 2025-12-29 16:43:05.057375: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-29 16:43:05.101656: embedding
> test_pipeop_isomap.R: 2025-12-29 16:43:05.10309: DONE
> test_pipeop_isomap.R: 2025-12-29 16:43:05.143283: L-Isomap embed START
> test_pipeop_isomap.R: 2025-12-29 16:43:05.144043: constructing knn graph
> test_pipeop_isomap.R: 2025-12-29 16:43:05.167244: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-29 16:43:05.217926: embedding
> test_pipeop_isomap.R: 2025-12-29 16:43:05.219741: DONE
> test_pipeop_isomap.R: 2025-12-29 16:43:05.350116: Isomap START
> test_pipeop_isomap.R: 2025-12-29 16:43:05.350722: constructing knn graph
> test_pipeop_isomap.R: 2025-12-29 16:43:05.376445: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-29 16:43:05.477853: Classical Scaling
> test_pipeop_isomap.R: 2025-12-29 16:43:05.558452: L-Isomap embed START
> test_pipeop_isomap.R: 2025-12-29 16:43:05.559253: constructing knn graph
> test_pipeop_isomap.R: 2025-12-29 16:43:05.600312: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-29 16:43:05.843249: embedding
> test_pipeop_isomap.R: 2025-12-29 16:43:05.848632: DONE
> test_pipeop_isomap.R: 2025-12-29 16:43:06.063926: Isomap START
> test_pipeop_isomap.R: 2025-12-29 16:43:06.064509: constructing knn graph
> test_pipeop_isomap.R: 2025-12-29 16:43:06.075945: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-29 16:43:06.094892: Classical Scaling
> test_pipeop_isomap.R: 2025-12-29 16:43:06.145816: L-Isomap embed START
> test_pipeop_isomap.R: 2025-12-29 16:43:06.146667: constructing knn graph
> test_pipeop_isomap.R: 2025-12-29 16:43:06.167721: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-29 16:43:06.211328: embedding
> test_pipeop_isomap.R: 2025-12-29 16:43:06.212719: DONE
> test_pipeop_isomap.R: 2025-12-29 16:43:06.424735: Isomap START
> test_pipeop_isomap.R: 2025-12-29 16:43:06.425361: constructing knn graph
> test_pipeop_isomap.R: 2025-12-29 16:43:06.452273: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-29 16:43:06.47401: Classical Scaling
> test_pipeop_isomap.R: 2025-12-29 16:43:06.550731: L-Isomap embed START
> test_pipeop_isomap.R: 2025-12-29 16:43:06.55163: constructing knn graph
> test_pipeop_isomap.R: 2025-12-29 16:43:06.572063: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-29 16:43:06.621089: embedding
> test_pipeop_isomap.R: 2025-12-29 16:43:06.622483: DONE
> test_pipeop_isomap.R: 2025-12-29 16:43:06.745437: Isomap START
> test_pipeop_isomap.R: 2025-12-29 16:43:06.746171: constructing knn graph
> test_pipeop_isomap.R: 2025-12-29 16:43:06.756264: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-29 16:43:06.778414: Classical Scaling
> test_pipeop_isomap.R: 2025-12-29 16:43:06.860723: L-Isomap embed START
> test_pipeop_isomap.R: 2025-12-29 16:43:06.861638: constructing knn graph
> test_pipeop_isomap.R: 2025-12-29 16:43:06.882226: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-29 16:43:06.947569: embedding
> test_pipeop_isomap.R: 2025-12-29 16:43:06.949285: DONE
> test_pipeop_isomap.R: 2025-12-29 16:43:07.069397: Isomap START
> test_pipeop_isomap.R: 2025-12-29 16:43:07.070136: constructing knn graph
> test_pipeop_isomap.R: 2025-12-29 16:43:07.081528: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-29 16:43:07.103276: Classical Scaling
> test_pipeop_isomap.R: 2025-12-29 16:43:07.172543: L-Isomap embed START
> test_pipeop_isomap.R: 2025-12-29 16:43:07.173476: constructing knn graph
> test_pipeop_isomap.R: 2025-12-29 16:43:07.191375: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-29 16:43:07.231745: embedding
> test_pipeop_isomap.R: 2025-12-29 16:43:07.233122: DONE
> test_pipeop_isomap.R: 2025-12-29 16:43:07.357455: Isomap START
> test_pipeop_isomap.R: 2025-12-29 16:43:07.357913: constructing knn graph
> test_pipeop_isomap.R: 2025-12-29 16:43:07.366637: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-29 16:43:07.389203: Classical Scaling
> test_pipeop_isomap.R: 2025-12-29 16:43:07.457666: L-Isomap embed START
> test_pipeop_isomap.R: 2025-12-29 16:43:07.458923: constructing knn graph
> test_pipeop_isomap.R: 2025-12-29 16:43:07.48235: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-29 16:43:07.518177: embedding
> test_pipeop_isomap.R: 2025-12-29 16:43:07.519997: DONE
> test_pipeop_isomap.R: 2025-12-29 16:43:07.652329: Isomap START
> test_pipeop_isomap.R: 2025-12-29 16:43:07.65276: constructing knn graph
> test_pipeop_isomap.R: 2025-12-29 16:43:07.662851: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-29 16:43:07.686006: Classical Scaling
> test_pipeop_isomap.R: 2025-12-29 16:43:07.790137: Isomap START
> test_pipeop_isomap.R: 2025-12-29 16:43:07.790768: constructing knn graph
> test_pipeop_isomap.R: 2025-12-29 16:43:07.79911: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-29 16:43:07.81472: Classical Scaling
> test_pipeop_isomap.R: 2025-12-29 16:43:07.852248: Isomap START
> test_pipeop_isomap.R: 2025-12-29 16:43:07.852877: constructing knn graph
> test_pipeop_isomap.R: 2025-12-29 16:43:07.865244: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-29 16:43:07.888866: Classical Scaling
Saving _problems/test_pipeop_nmf-45.R
Saving _problems/test_pipeop_nmf-73.R
Saving _problems/test_pipeop_nmf-93.R
Saving _problems/test_pipeop_nmf-98.R
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_textvectorizer.R: 'as(<dgCMatrix>, "dgTMatrix")' is deprecated.
> test_pipeop_textvectorizer.R: Use 'as(., "TsparseMatrix")' instead.
> test_pipeop_textvectorizer.R: See help("Deprecated") and help("Matrix-deprecated").
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
[ FAIL 6 | WARN 0 | SKIP 99 | PASS 13006 ]
══ Skipped tests (99) ══════════════════════════════════════════════════════════
• On CRAN (95): 'test_CnfFormula_simplify.R:6:3', 'test_CnfFormula.R:591:3',
'test_Graph.R:283:3', 'test_PipeOp.R:32:1', 'test_GraphLearner.R:5:3',
'test_GraphLearner.R:221:3', 'test_GraphLearner.R:343:3',
'test_GraphLearner.R:408:3', 'test_GraphLearner.R:571:3',
'test_dictionary.R:7:3', 'test_learner_weightedaverage.R:5:3',
'test_learner_weightedaverage.R:57:3',
'test_learner_weightedaverage.R:105:3',
'test_learner_weightedaverage.R:152:3', 'test_meta.R:39:3',
'test_mlr_graphs_branching.R:26:3', 'test_mlr_graphs_bagging.R:6:3',
'test_mlr_graphs_robustify.R:5:3', 'test_pipeop_adas.R:8:3',
'test_pipeop_blsmote.R:8:3', 'test_pipeop_branch.R:4:3',
'test_pipeop_chunk.R:4:3', 'test_pipeop_classbalancing.R:7:3',
'test_pipeop_boxcox.R:7:3', 'test_pipeop_classweights.R:10:3',
'test_pipeop_collapsefactors.R:6:3', 'test_pipeop_colapply.R:9:3',
'test_pipeop_copy.R:5:3', 'test_pipeop_colroles.R:6:3',
'test_pipeop_decode.R:14:3', 'test_pipeop_encode.R:21:3',
'test_pipeop_encodeimpact.R:11:3', 'test_pipeop_encodepl.R:5:3',
'test_pipeop_encodepl.R:72:3', 'test_pipeop_encodelmer.R:15:3',
'test_pipeop_encodelmer.R:37:3', 'test_pipeop_encodelmer.R:80:3',
'test_pipeop_featureunion.R:9:3', 'test_pipeop_featureunion.R:134:3',
'test_pipeop_filter.R:7:3', 'test_pipeop_fixfactors.R:9:3',
'test_pipeop_histbin.R:7:3', 'test_pipeop_ensemble.R:6:3',
'test_pipeop_ica.R:7:3', 'test_pipeop_imputelearner.R:43:3',
'test_pipeop_impute.R:4:3', 'test_pipeop_isomap.R:10:3',
'test_pipeop_kernelpca.R:9:3', 'test_pipeop_learner.R:17:3',
'test_pipeop_info.R:6:3', 'test_pipeop_learnerpicvplus.R:163:3',
'test_pipeop_missind.R:6:3', 'test_pipeop_modelmatrix.R:7:3',
'test_pipeop_learnercv.R:31:3', 'test_pipeop_multiplicityexply.R:9:3',
'test_pipeop_mutate.R:9:3', 'test_pipeop_nearmiss.R:7:3',
'test_pipeop_multiplicityimply.R:9:3', 'test_pipeop_ovr.R:9:3',
'test_pipeop_ovr.R:48:3', 'test_pipeop_pca.R:8:3',
'test_pipeop_proxy.R:14:3', 'test_pipeop_quantilebin.R:5:3',
'test_pipeop_randomprojection.R:6:3', 'test_pipeop_randomresponse.R:5:3',
'test_pipeop_removeconstants.R:6:3', 'test_pipeop_renamecolumns.R:6:3',
'test_pipeop_replicate.R:9:3', 'test_pipeop_nmf.R:6:3',
'test_pipeop_scale.R:6:3', 'test_pipeop_scale.R:10:3',
'test_pipeop_scalemaxabs.R:6:3', 'test_pipeop_rowapply.R:6:3',
'test_pipeop_scalerange.R:7:3', 'test_pipeop_select.R:9:3',
'test_pipeop_smotenc.R:8:3', 'test_pipeop_smote.R:10:3',
'test_pipeop_subsample.R:6:3', 'test_pipeop_targetinvert.R:4:3',
'test_pipeop_targetmutate.R:5:3', 'test_pipeop_targettrafo.R:4:3',
'test_pipeop_targettrafoscalerange.R:5:3', 'test_pipeop_task_preproc.R:4:3',
'test_pipeop_task_preproc.R:14:3', 'test_pipeop_spatialsign.R:6:3',
'test_pipeop_tomek.R:7:3', 'test_pipeop_textvectorizer.R:37:3',
'test_pipeop_textvectorizer.R:186:3', 'test_pipeop_unbranch.R:10:3',
'test_pipeop_updatetarget.R:89:3', 'test_pipeop_vtreat.R:9:3',
'test_pipeop_yeojohnson.R:7:3', 'test_pipeop_tunethreshold.R:111:3',
'test_pipeop_tunethreshold.R:191:3', 'test_typecheck.R:188:3'
• Skipping (1): 'test_GraphLearner.R:1278:3'
• empty test (3): 'test_pipeop_isomap.R:111:1', 'test_pipeop_missind.R:101:1',
'test_ppl.R:61:1'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test_pipeop_datefeatures.R:7:3'): PipeOpDateFeatures - basic properties ──
Error in `seq.Date(as.Date("2020-01-31"), length.out = 150L)`: exactly two of 'to', 'by' and 'length.out' / 'along.with' must be specified
Backtrace:
▆
1. ├─base::seq(as.Date("2020-01-31"), length.out = 150L) at test_pipeop_datefeatures.R:7:3
2. └─base::seq.Date(as.Date("2020-01-31"), length.out = 150L)
── Error ('test_pipeop_datefeatures.R:17:3'): PipeOpDateFeatures - finds POSIXct column ──
Error in `seq.Date(as.Date("2020-01-31"), length.out = 150L)`: exactly two of 'to', 'by' and 'length.out' / 'along.with' must be specified
Backtrace:
▆
1. ├─base::seq(as.Date("2020-01-31"), length.out = 150L) at test_pipeop_datefeatures.R:17:3
2. └─base::seq.Date(as.Date("2020-01-31"), length.out = 150L)
── Error ('test_pipeop_nmf.R:45:3'): PipeOpNMF - does not modify search path when NMF is not loaded, fix for #929 ──
Error in `detach(package:generics)`: invalid 'name' argument
Backtrace:
▆
1. └─base::detach(package:generics) at test_pipeop_nmf.R:45:3
── Failure ('test_pipeop_nmf.R:73:3'): PipeOpNMF - does not modify search path when NMF is loaded, fix for #929 ──
Expected `all(...)` to be TRUE.
Differences:
`actual`: FALSE
`expected`: TRUE
── Failure ('test_pipeop_nmf.R:93:3'): PipeOpNMF - does not modify search path when some of NMF's dependencies are loaded, fix for #929 ──
Expected `all(paste0("package:", c("BiocGenerics", "generics")) %in% search())` to be TRUE.
Differences:
`actual`: FALSE
`expected`: TRUE
── Error ('test_pipeop_nmf.R:98:3'): PipeOpNMF - does not modify search path when some of NMF's dependencies are loaded, fix for #929 ──
Error in `FUN(X[[i]], ...)`: invalid 'name' argument
This happened in PipeOp nmf's $train()
Backtrace:
▆
1. ├─op$train(list(tsk("iris"))) at test_pipeop_nmf.R:98:3
2. │ └─mlr3pipelines:::.__PipeOp__train(...)
3. │ ├─base::withCallingHandlers(...)
4. │ └─private$.train(input)
5. │ └─mlr3pipelines:::.__PipeOpTaskPreproc__.train(...)
6. │ └─private$.train_task(intask)
7. │ └─mlr3pipelines:::.__PipeOpTaskPreproc__.train_task(...)
8. │ ├─data.table::as.data.table(...)
9. │ └─private$.train_dt(dt, task$levels(cols), task$truth())
10. │ └─mlr3pipelines:::.__PipeOpNMF__.train_dt(...)
11. │ └─mlr3misc::map(to_be_detached, detach, character.only = TRUE)
12. │ └─base::lapply(.x, .f, ...)
13. │ └─base (local) FUN(X[[i]], ...)
14. │ └─base::stop("invalid 'name' argument")
15. └─base::.handleSimpleError(...)
16. └─mlr3pipelines (local) h(simpleError(msg, call))
[ FAIL 6 | WARN 0 | SKIP 99 | PASS 13006 ]
Error:
! Test failures.
Execution halted
Flavor: r-oldrel-windows-x86_64
Current CRAN status: OK: 13
Current CRAN status: OK: 13