CRAN Package Check Results for Maintainer ‘Laure Cougnaud <laure.cougnaud at openanalytics.eu>’

Last updated on 2025-04-19 06:49:56 CEST.

Package FAIL ERROR NOTE OK
clinDataReview 3 10
clinUtils 1 8 4
inTextSummaryTable 9 4
mpm 13
nlcv 1 12
patientProfilesVis 3 10

Package clinDataReview

Current CRAN status: NOTE: 3, OK: 10

Version: 1.6.2
Check: installed package size
Result: NOTE installed size is 5.7Mb sub-directories of 1Mb or more: doc 4.3Mb Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64

Package clinUtils

Current CRAN status: FAIL: 1, NOTE: 8, OK: 4

Version: 0.2.0
Check: Rd cross-references
Result: NOTE Found the following Rd file(s) with Rd \link{} targets missing package anchors: knitPrintListObjects.Rd: knitr Please provide package anchors for all Rd \link{} targets not in the package itself and the base packages. Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-windows-x86_64, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-windows-x86_64

Version: 0.2.0
Check: installed package size
Result: NOTE installed size is 7.6Mb sub-directories of 1Mb or more: doc 6.5Mb Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64

Version: 0.2.0
Check: PDF version of manual
Result: FAIL Check process probably crashed or hung up for 20 minutes ... killed Most likely this happened in the example checks (?), if not, ignore the following last lines of example output: > # capitalize only the first word of the sentence > simpleCap(x = "this is the caption of my figure.") this is the caption of my figure. "This is the caption of my figure." > # capitalize all words > simpleCap(x = "this is the caption of my figure.", onlyFirst = FALSE) this is the caption of my figure. "This Is The Caption Of My Figure." > # opposite: set the first letter of the first word to lower case > simpleCap(x = "This is the caption of my figure.", rev = TRUE) This is the caption of my figure. "this is the caption of my figure." > > > > ### * <FOOTER> > ### > cleanEx() > options(digits = 7L) > base::cat("Time elapsed: ", proc.time() - base::get("ptime", pos = 'CheckExEnv'),"\n") Time elapsed: 6.67 1.42 8.17 NA NA > grDevices::dev.off() null device 1 > ### > ### Local variables: *** > ### mode: outline-minor *** > ### outline-regexp: "\\(> \\)?### [*]+" *** > ### End: *** > quit('no') ======== End of example output (where/before crash/hang up occured ?) ======== Flavor: r-oldrel-windows-x86_64

Package inTextSummaryTable

Current CRAN status: NOTE: 9, OK: 4

Version: 3.3.3
Check: Rd cross-references
Result: NOTE Found the following Rd file(s) with Rd \link{} targets missing package anchors: inTextSummaryTable-stats.Rd: roundHalfUpTextFormat Please provide package anchors for all Rd \link{} targets not in the package itself and the base packages. Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-windows-x86_64, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-windows-x86_64

Version: 3.3.3
Check: installed package size
Result: NOTE installed size is 10.2Mb sub-directories of 1Mb or more: doc 9.7Mb Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64

Package mpm

Current CRAN status: OK: 13

Package nlcv

Current CRAN status: ERROR: 1, NOTE: 12

Version: 0.3.5
Check: Rd files
Result: NOTE checkRd: (-1) mcrPlot.Rd:42-44: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) mcrPlot.Rd:45-47: Lost braces in \itemize; \value handles \item{}{} directly Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-macos-arm64, r-release-windows-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64

Version: 0.3.5
Check: Rd cross-references
Result: NOTE Found the following Rd file(s) with Rd \link{} targets missing package anchors: predict.pamrML.Rd: pamr.predict xtable.confusionMatrix.Rd: confusionMatrix Please provide package anchors for all Rd \link{} targets not in the package itself and the base packages. Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-windows-x86_64, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-windows-x86_64

Version: 0.3.5
Check: package dependencies
Result: ERROR Package required but not available: ‘MLInterfaces’ See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ manual. Flavor: r-release-macos-x86_64

Package patientProfilesVis

Current CRAN status: NOTE: 3, OK: 10

Version: 2.0.9
Check: installed package size
Result: NOTE installed size is 5.6Mb sub-directories of 1Mb or more: doc 5.2Mb Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64