Last updated on 2024-12-23 12:49:46 CET.
| Package | ERROR | NOTE | OK |
|---|---|---|---|
| aPEAR | 2 | 3 | 8 |
Current CRAN status: ERROR: 2, NOTE: 3, OK: 8
Version: 1.0.0
Check: re-building of vignette outputs
Result: NOTE
Note: skipping ‘aPEAR-vignette.Rmd’ due to unavailable dependencies:
'clusterProfiler'
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-patched-linux-x86_64, r-release-linux-x86_64
Version: 1.0.0
Check: tests
Result: ERROR
Running ‘testthat.R’ [8s/9s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/tests.html
> # * https://testthat.r-lib.org/reference/test_package.html#special-files
>
> library(testthat)
> library(aPEAR)
>
> test_check("aPEAR")
Attaching package: 'dplyr'
The following object is masked from 'package:testthat':
matches
The following objects are masked from 'package:stats':
filter, lag
The following objects are masked from 'package:base':
intersect, setdiff, setequal, union
[ FAIL 1 | WARN 4 | SKIP 1 | PASS 105 ]
══ Skipped tests (1) ═══════════════════════════════════════════════════════════
• empty test (1): 'test-prepareEnrichment.R:1:1'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-cluster.R:63:3'): pathwayClusters filters out by cluster size ──
Error in `pathwayClusters(sim, method = "s", minClusterSize = 13)`: No clusters found.
Backtrace:
▆
1. └─aPEAR:::pathwayClusters(sim, method = "s", minClusterSize = 13) at test-cluster.R:63:3
[ FAIL 1 | WARN 4 | SKIP 1 | PASS 105 ]
Error: Test failures
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 1.0.0
Check: tests
Result: ERROR
Running ‘testthat.R’ [21s/27s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/tests.html
> # * https://testthat.r-lib.org/reference/test_package.html#special-files
>
> library(testthat)
> library(aPEAR)
>
> test_check("aPEAR")
Attaching package: 'dplyr'
The following object is masked from 'package:testthat':
matches
The following objects are masked from 'package:stats':
filter, lag
The following objects are masked from 'package:base':
intersect, setdiff, setequal, union
[ FAIL 1 | WARN 4 | SKIP 1 | PASS 105 ]
══ Skipped tests (1) ═══════════════════════════════════════════════════════════
• empty test (1): 'test-prepareEnrichment.R:1:1'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-cluster.R:63:3'): pathwayClusters filters out by cluster size ──
Error in `pathwayClusters(sim, method = "s", minClusterSize = 13)`: No clusters found.
Backtrace:
▆
1. └─aPEAR:::pathwayClusters(sim, method = "s", minClusterSize = 13) at test-cluster.R:63:3
[ FAIL 1 | WARN 4 | SKIP 1 | PASS 105 ]
Error: Test failures
Execution halted
Flavor: r-devel-linux-x86_64-fedora-clang
Version: 1.0.0
Check: package dependencies
Result: NOTE
Packages suggested but not available for checking:
'clusterProfiler', 'DOSE'
Flavors: r-patched-linux-x86_64, r-release-linux-x86_64