CRAN Package Check Results for Maintainer ‘Karline Soetaert <Karline.Soetaert at nioz.nl>’

Last updated on 2025-04-19 06:49:56 CEST.

Package FAIL NOTE OK
AquaEnv 13
diagram 13
ecolMod 13
FME 1 5 7
LIM 13
limSolve 13
marelac 13
NetIndices 13
OceanView 6 7
plot3D 6 7
plot3Drgl 6 7
ReacTran 13
rootSolve 13
shape 13

Package AquaEnv

Current CRAN status: NOTE: 13

Version: 1.0-4
Check: Rd files
Result: NOTE checkRd: (-1) BufferFactors.Rd:33: Escaped LaTeX specials: \_ checkRd: (-1) BufferFactors.Rd:34: Escaped LaTeX specials: \_ checkRd: (-1) BufferFactors.Rd:35: Escaped LaTeX specials: \_ checkRd: (-1) BufferFactors.Rd:36: Escaped LaTeX specials: \_ checkRd: (-1) BufferFactors.Rd:37: Escaped LaTeX specials: \_ checkRd: (-1) BufferFactors.Rd:38: Escaped LaTeX specials: \_ checkRd: (-1) BufferFactors.Rd:40: Escaped LaTeX specials: \_ \_ checkRd: (-1) BufferFactors.Rd:42: Escaped LaTeX specials: \_ checkRd: (-1) BufferFactors.Rd:44: Escaped LaTeX specials: \_ checkRd: (-1) K0_CO2.Rd:3: Escaped LaTeX specials: \_ checkRd: (-1) K0_O2.Rd:3: Escaped LaTeX specials: \_ checkRd: (-1) K_BOH3.Rd:3: Escaped LaTeX specials: \_ checkRd: (-1) K_BOH3.Rd:13: Escaped LaTeX specials: \_ checkRd: (-1) K_BOH3.Rd:14: Escaped LaTeX specials: \_ checkRd: (-1) K_CO2.Rd:3: Escaped LaTeX specials: \_ checkRd: (-1) K_CO2.Rd:16: Escaped LaTeX specials: \_ checkRd: (-1) K_CO2.Rd:17: Escaped LaTeX specials: \_ checkRd: (-1) K_H2PO4.Rd:3: Escaped LaTeX specials: \_ checkRd: (-1) K_H2PO4.Rd:13: Escaped LaTeX specials: \_ checkRd: (-1) K_H2PO4.Rd:14: Escaped LaTeX specials: \_ checkRd: (-1) K_H2S.Rd:3: Escaped LaTeX specials: \_ checkRd: (-1) K_H2S.Rd:13: Escaped LaTeX specials: \_ checkRd: (-1) K_H2S.Rd:14: Escaped LaTeX specials: \_ checkRd: (-1) K_H3PO4.Rd:3: Escaped LaTeX specials: \_ checkRd: (-1) K_H3PO4.Rd:13: Escaped LaTeX specials: \_ checkRd: (-1) K_H3PO4.Rd:14: Escaped LaTeX specials: \_ checkRd: (-1) K_HCO3.Rd:3: Escaped LaTeX specials: \_ checkRd: (-1) K_HCO3.Rd:17: Escaped LaTeX specials: \_ checkRd: (-1) K_HCO3.Rd:18: Escaped LaTeX specials: \_ checkRd: (-1) K_HF.Rd:3: Escaped LaTeX specials: \_ checkRd: (-1) K_HF.Rd:17: Escaped LaTeX specials: \_ checkRd: (-1) K_HPO4.Rd:3: Escaped LaTeX specials: \_ checkRd: (-1) K_HPO4.Rd:13: Escaped LaTeX specials: \_ checkRd: (-1) K_HPO4.Rd:14: Escaped LaTeX specials: \_ checkRd: (-1) K_HSO4.Rd:3: Escaped LaTeX specials: \_ checkRd: (-1) K_NH4.Rd:3: Escaped LaTeX specials: \_ checkRd: (-1) K_NH4.Rd:13: Escaped LaTeX specials: \_ checkRd: (-1) K_NH4.Rd:14: Escaped LaTeX specials: \_ checkRd: (-1) K_SiOH4.Rd:3: Escaped LaTeX specials: \_ checkRd: (-1) K_SiOH4.Rd:13: Escaped LaTeX specials: \_ checkRd: (-1) K_SiOH4.Rd:14: Escaped LaTeX specials: \_ checkRd: (-1) K_SiOOH3.Rd:3: Escaped LaTeX specials: \_ checkRd: (-1) K_SiOOH3.Rd:13: Escaped LaTeX specials: \_ checkRd: (-1) K_SiOOH3.Rd:14: Escaped LaTeX specials: \_ checkRd: (-1) K_W.Rd:3: Escaped LaTeX specials: \_ checkRd: (-1) K_W.Rd:13: Escaped LaTeX specials: \_ checkRd: (-1) K_W.Rd:14: Escaped LaTeX specials: \_ checkRd: (-1) Ksp_aragonite.Rd:3: Escaped LaTeX specials: \_ checkRd: (-1) Ksp_calcite.Rd:3: Escaped LaTeX specials: \_ checkRd: (-1) PhysChemConst.Rd:9: Escaped LaTeX specials: \_ checkRd: (-1) TAfit.Rd:4: Escaped LaTeX specials: \_ checkRd: (-1) TAfit.Rd:24: Escaped LaTeX specials: \_ checkRd: (-1) TAfit.Rd:31: Escaped LaTeX specials: \_ checkRd: (-1) TAfit.Rd:32: Escaped LaTeX specials: \_ \_ \_ checkRd: (-1) TAfit.Rd:33: Escaped LaTeX specials: \_ checkRd: (-1) TAfit.Rd:34: Escaped LaTeX specials: \_ checkRd: (-1) TAfit.Rd:35: Escaped LaTeX specials: \_ checkRd: (-1) TAfit.Rd:36: Escaped LaTeX specials: \_ checkRd: (-1) TAfit.Rd:40: Escaped LaTeX specials: \_ \_ checkRd: (-1) TAfit.Rd:42: Escaped LaTeX specials: \_ checkRd: (-1) aquaenv.Rd:52: Escaped LaTeX specials: \_ checkRd: (-1) aquaenv.Rd:53: Escaped LaTeX specials: \_ \_ \_ checkRd: (-1) aquaenv.Rd:54: Escaped LaTeX specials: \_ checkRd: (-1) aquaenv.Rd:55: Escaped LaTeX specials: \_ checkRd: (-1) aquaenv.Rd:56: Escaped LaTeX specials: \_ checkRd: (-1) aquaenv.Rd:57: Escaped LaTeX specials: \_ checkRd: (-1) aquaenv.Rd:59: Escaped LaTeX specials: \_ \_ checkRd: (-1) aquaenv.Rd:61: Escaped LaTeX specials: \_ checkRd: (-1) aquaenv.Rd:63: Escaped LaTeX specials: \_ checkRd: (-1) aquaenv.Rd:258: Escaped LaTeX specials: \_ checkRd: (-1) aquaenv.Rd:259: Escaped LaTeX specials: \_ checkRd: (-1) aquaenv.Rd:260: Escaped LaTeX specials: \_ \_ checkRd: (-1) aquaenv.Rd:261: Escaped LaTeX specials: \_ \_ \_ checkRd: (-1) aquaenv.Rd:262: Escaped LaTeX specials: \_ \_ \_ checkRd: (-1) aquaenv.Rd:263: Escaped LaTeX specials: \_ \_ \_ checkRd: (-1) aquaenv.Rd:264: Escaped LaTeX specials: \_ \_ \_ checkRd: (-1) aquaenv.Rd:265: Escaped LaTeX specials: \_ \_ \_ checkRd: (-1) aquaenv.Rd:266: Escaped LaTeX specials: \_ \_ \_ checkRd: (-1) aquaenv.Rd:267: Escaped LaTeX specials: \_ checkRd: (-1) aquaenv.Rd:277: Escaped LaTeX specials: \_ \_ checkRd: (-1) convert.Rd:18: Escaped LaTeX specials: \_ checkRd: (-1) convert.Rd:19: Escaped LaTeX specials: \_ checkRd: (-1) gauge_p.Rd:3: Escaped LaTeX specials: \_ checkRd: (-1) sample_dickson1981.Rd:3: Escaped LaTeX specials: \_ checkRd: (-1) sample_dickson1981.Rd:16: Escaped LaTeX specials: \_ checkRd: (-1) sample_dickson1981.Rd:17: Escaped LaTeX specials: \_ checkRd: (-1) sample_dickson1981.Rd:23: Escaped LaTeX specials: \_ checkRd: (-1) sample_dickson1981.Rd:24: Escaped LaTeX specials: \_ checkRd: (-1) sample_dickson1981.Rd:25: Escaped LaTeX specials: \_ checkRd: (-1) sample_dickson1981.Rd:26: Escaped LaTeX specials: \_ checkRd: (-1) sample_dickson1981.Rd:27: Escaped LaTeX specials: \_ checkRd: (-1) sample_dickson1981.Rd:28: Escaped LaTeX specials: \_ checkRd: (-1) sample_dickson2007.Rd:3: Escaped LaTeX specials: \_ checkRd: (-1) sample_dickson2007.Rd:16: Escaped LaTeX specials: \_ checkRd: (-1) sample_dickson2007.Rd:17: Escaped LaTeX specials: \_ checkRd: (-1) titration.Rd:24: Escaped LaTeX specials: \_ checkRd: (-1) titration.Rd:25: Escaped LaTeX specials: \_ \_ \_ checkRd: (-1) titration.Rd:26: Escaped LaTeX specials: \_ checkRd: (-1) titration.Rd:27: Escaped LaTeX specials: \_ checkRd: (-1) titration.Rd:28: Escaped LaTeX specials: \_ checkRd: (-1) titration.Rd:29: Escaped LaTeX specials: \_ checkRd: (-1) titration.Rd:30: Escaped LaTeX specials: \_ \_ checkRd: (-1) titration.Rd:31: Escaped LaTeX specials: \_ Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64

Package diagram

Current CRAN status: OK: 13

Package ecolMod

Current CRAN status: OK: 13

Package FME

Current CRAN status: FAIL: 1, NOTE: 5, OK: 7

Version: 1.3.6.3
Check: Rd cross-references
Result: NOTE Found the following Rd file(s) with Rd \link{} targets missing package anchors: obsplot.Rd: print.deSolve, ode, deSolve Please provide package anchors for all Rd \link{} targets not in the package itself and the base packages. Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-windows-x86_64, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-windows-x86_64

Version: 1.3.6.3
Check: re-building of vignette outputs
Result: FAIL Check process probably crashed or hung up for 20 minutes ... killed Most likely this happened in the example checks (?), if not, ignore the following last lines of example output: > > ## Select one variable for plotting; plot the quantiles > plot(Sens2, xlab = "time, hour", ylab = "molC/m3", which = "Bact", quant = TRUE) > > ## Add data > data <- cbind(time = c(0,10,20,30), Bact = c(0,1,10,45)) > plot(Sens2, xlab = "time, hour", ylab = "molC/m3", quant = TRUE, + obs = data, obspar = list(col = "darkblue", pch = 16, cex = 2)) > > > > > > > graphics::par(get("par.postscript", pos = 'CheckExEnv')) > ### * <FOOTER> > ### > cleanEx() > options(digits = 7L) > base::cat("Time elapsed: ", proc.time() - base::get("ptime", pos = 'CheckExEnv'),"\n") Time elapsed: 10.93 0.6 11.51 NA NA > grDevices::dev.off() null device 1 > ### > ### Local variables: *** > ### mode: outline-minor *** > ### outline-regexp: "\\(> \\)?### [*]+" *** > ### End: *** > quit('no') ======== End of example output (where/before crash/hang up occured ?) ======== Flavor: r-release-windows-x86_64

Package LIM

Current CRAN status: OK: 13

Package limSolve

Current CRAN status: OK: 13

Package marelac

Current CRAN status: OK: 13

Package NetIndices

Current CRAN status: OK: 13

Package OceanView

Current CRAN status: NOTE: 6, OK: 7

Version: 1.0.7
Check: Rd cross-references
Result: NOTE Found the following Rd file(s) with Rd \link{} targets missing package anchors: Chesapeake.Rd: Oxsat Sylt.Rd: image2D, ImageOcean, scatter2D, Oxsat TempTraject.Rd: image2D, ImageOcean, scatter2D, Oxsat WSnioz.Rd: image2D, ImageOcean, scatter2D, Oxsat moviepersp.Rd: persp3Drgl, jet.col movieslice.Rd: slice3Drgl, jet.col, slice3D quiver.Rd: jet.col, colkey, contour2D, image2D, arrows2D, arrows3D, Arrows tracers2D.Rd: colkey, contour2D, image2D, scatter2D tracers3D.Rd: points3Drgl, colkey, scatter3D vectorplot.Rd: jet.col, colkey, Arrows Please provide package anchors for all Rd \link{} targets not in the package itself and the base packages. Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-windows-x86_64, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-windows-x86_64

Package plot3D

Current CRAN status: NOTE: 6, OK: 7

Version: 1.4.1
Check: Rd cross-references
Result: NOTE Found the following Rd file(s) with Rd \link{} targets missing package anchors: slice3D.Rd: computeContour3d Please provide package anchors for all Rd \link{} targets not in the package itself and the base packages. Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-windows-x86_64, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-windows-x86_64

Package plot3Drgl

Current CRAN status: NOTE: 6, OK: 7

Version: 1.0.4
Check: Rd cross-references
Result: NOTE Found the following Rd file(s) with Rd \link{} targets missing package anchors: cutrgl.Rd: par3d, open3d, material3d, plotdev imagergl.Rd: contour2D, colkey, persp3D, perspbox, image3D, contour3D, scatter3D, arrows3D, segments3D, text3D, image2D, scatter2D, segments2D, text2D, arrows2D persp3Drgl.Rd: persp3D, ribbon3D, hist3D, scatter3D, points3D, lines3D, segments3D, slice3D, slicecont3D, isosurf3D, voxel3D, surf3D, spheresurf3D, box3D, border3D, rect3D, perspbox, plotdev plotrgl.Rd: material3d, par3d, open3d, arrows3D, scatter3D, plotdev, persp3D, slice3D, surf3D Please provide package anchors for all Rd \link{} targets not in the package itself and the base packages. Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-windows-x86_64, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-windows-x86_64

Package ReacTran

Current CRAN status: OK: 13

Package rootSolve

Current CRAN status: OK: 13

Package shape

Current CRAN status: OK: 13