CRAN Package Check Results for Maintainer ‘Isaac Gravestock <isaac.gravestock at roche.com>’

Last updated on 2025-04-19 06:49:54 CEST.

Package FAIL ERROR NOTE OK
bonsaiforest 3 10
maicplus 1 12
psborrow 13
rbmi 1 12
TrialEmulation 9 4

Package bonsaiforest

Current CRAN status: NOTE: 3, OK: 10

Version: 0.1.1
Check: installed package size
Result: NOTE installed size is 10.3Mb sub-directories of 1Mb or more: data 8.4Mb libs 1.3Mb Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64

Package maicplus

Current CRAN status: ERROR: 1, OK: 12

Version: 0.1.2
Check: re-building of vignette outputs
Result: ERROR Error(s) in re-building vignettes: --- re-building 'anchored_binary.Rmd' using rmarkdown Could not fetch http://www.zotero.org/styles/elsevier-vancouver HttpExceptionRequest Request { host = "www.zotero.org" port = 80 secure = False requestHeaders = [] path = "/styles/elsevier-vancouver" queryString = "" method = "GET" proxy = Nothing rawBody = False redirectCount = 10 responseTimeout = ResponseTimeoutDefault requestVersion = HTTP/1.1 proxySecureMode = ProxySecureWithConnect } ConnectionTimeout Error: processing vignette 'anchored_binary.Rmd' failed with diagnostics: pandoc document conversion failed with error 61 --- failed re-building 'anchored_binary.Rmd' --- re-building 'anchored_survival.Rmd' using rmarkdown Could not fetch http://www.zotero.org/styles/elsevier-vancouver HttpExceptionRequest Request { host = "www.zotero.org" port = 80 secure = False requestHeaders = [] path = "/styles/elsevier-vancouver" queryString = "" method = "GET" proxy = Nothing rawBody = False redirectCount = 10 responseTimeout = ResponseTimeoutDefault requestVersion = HTTP/1.1 proxySecureMode = ProxySecureWithConnect } ConnectionTimeout Error: processing vignette 'anchored_survival.Rmd' failed with diagnostics: pandoc document conversion failed with error 61 --- failed re-building 'anchored_survival.Rmd' --- re-building 'calculating_weights.Rmd' using rmarkdown Could not fetch http://www.zotero.org/styles/elsevier-vancouver HttpExceptionRequest Request { host = "www.zotero.org" port = 80 secure = False requestHeaders = [] path = "/styles/elsevier-vancouver" queryString = "" method = "GET" proxy = Nothing rawBody = False redirectCount = 10 responseTimeout = ResponseTimeoutDefault requestVersion = HTTP/1.1 proxySecureMode = ProxySecureWithConnect } ConnectionTimeout Error: processing vignette 'calculating_weights.Rmd' failed with diagnostics: pandoc document conversion failed with error 61 --- failed re-building 'calculating_weights.Rmd' --- re-building 'introduction.Rmd' using rmarkdown Could not fetch http://www.zotero.org/styles/elsevier-vancouver HttpExceptionRequest Request { host = "www.zotero.org" port = 80 secure = False requestHeaders = [] path = "/styles/elsevier-vancouver" queryString = "" method = "GET" proxy = Nothing rawBody = False redirectCount = 10 responseTimeout = ResponseTimeoutDefault requestVersion = HTTP/1.1 proxySecureMode = ProxySecureWithConnect } ConnectionTimeout Error: processing vignette 'introduction.Rmd' failed with diagnostics: pandoc document conversion failed with error 61 --- failed re-building 'introduction.Rmd' --- re-building 'kaplan_meier_plots.Rmd' using rmarkdown --- finished re-building 'kaplan_meier_plots.Rmd' --- re-building 'unanchored_binary.Rmd' using rmarkdown --- finished re-building 'unanchored_binary.Rmd' --- re-building 'unanchored_survival.Rmd' using rmarkdown --- finished re-building 'unanchored_survival.Rmd' SUMMARY: processing the following files failed: 'anchored_binary.Rmd' 'anchored_survival.Rmd' 'calculating_weights.Rmd' 'introduction.Rmd' Error: Vignette re-building failed. Execution halted Flavor: r-release-windows-x86_64

Package psborrow

Current CRAN status: OK: 13

Package rbmi

Current CRAN status: FAIL: 1, OK: 12

Additional issues

OpenBLAS

Version: 1.4.1
Check: HTML version of manual
Result: FAIL Check process probably crashed or hung up for 20 minutes ... killed Most likely this happened in the example checks (?), if not, ignore the following last lines of example output: > > flush(stderr()); flush(stdout()) > > ### Name: sort_by > ### Title: Sort 'data.frame' > ### Aliases: sort_by > > ### ** Examples > > ## Not run: > ##D sort_by(iris, c("Sepal.Length", "Sepal.Width"), decreasing = c(TRUE, FALSE)) > ## End(Not run) > > > > ### * <FOOTER> > ### > cleanEx() > options(digits = 7L) > base::cat("Time elapsed: ", proc.time() - base::get("ptime", pos = 'CheckExEnv'),"\n") Time elapsed: 1.28 0.14 1.43 NA NA > grDevices::dev.off() null device 1 > ### > ### Local variables: *** > ### mode: outline-minor *** > ### outline-regexp: "\\(> \\)?### [*]+" *** > ### End: *** > quit('no') ======== End of example output (where/before crash/hang up occured ?) ======== Flavor: r-devel-windows-x86_64

Package TrialEmulation

Current CRAN status: NOTE: 9, OK: 4

Version: 0.0.4.2
Check: DESCRIPTION meta-information
Result: NOTE Missing dependency on R >= 4.1.0 because package code uses the pipe |> or function shorthand \(...) syntax added in R 4.1.0. File(s) using such syntax: ‘calculate_weights.Rd’ ‘fit_msm.Rd’ ‘load_expanded_data.Rd’ ‘save_to_csv.Rd’ ‘save_to_datatable.Rd’ ‘save_to_duckdb.Rd’ ‘set_censor_weight_model.Rd’ ‘set_data.Rd’ ‘set_expansion_options.Rd’ ‘set_outcome_model.Rd’ ‘set_switch_weight_model.Rd’ ‘weight_model_data_indices.Rd’ Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-macos-arm64, r-release-windows-x86_64