Last updated on 2024-12-23 12:49:41 CET.
| Package | ERROR | NOTE | OK |
|---|---|---|---|
| citation | 13 | ||
| gms | 13 | ||
| goxygen | 3 | 10 | |
| madrat | 1 | 12 | |
| magclass | 1 | 8 | 4 |
Current CRAN status: OK: 13
Current CRAN status: OK: 13
Current CRAN status: NOTE: 3, OK: 10
Version: 1.0.3
Check: Rd cross-references
Result: NOTE
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
createListModularCode.Rd: codeCheck
createListSimpleCode.Rd: codeCheck
goxygen.Rd: codeCheck
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-windows-x86_64
Current CRAN status: ERROR: 1, OK: 12
Version: 3.6.4
Check: Rd files
Result: NOTE
checkRd: (-1) toolAggregate.Rd:49: Lost braces; missing escapes or markup?
49 | If {rel} is missing \code{to} refers to the aggregation target dimension name.}
| ^
checkRd: (-1) toolGetMapping.Rd:18: Lost braces
18 | and rda (which needs to have the data stored with the object name "data"!). Use code{\link{toolConvertMapping}}
| ^
Flavor: r-devel-linux-x86_64-debian-clang
Version: 3.6.4
Check: tests
Result: ERROR
Running ‘testthat.R’ [37s/46s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(madrat)
Loading required package: magclass
>
> test_check("madrat")
[ FAIL 3 | WARN 2 | SKIP 8 | PASS 581 ]
══ Skipped tests (8) ═══════════════════════════════════════════════════════════
• On CRAN (7): 'test-calcOutput.R:23:3', 'test-calcOutput.R:114:3',
'test-metadataGFZ.R:2:3', 'test-puc.R:2:4', 'test-readSource.R:55:3',
'test-readSource.R:61:3', 'test-readSource.R:70:3'
• {reshape2} is not installed (1): 'test-calcOutput.R:450:3'
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-toolCountryFill.R:5:3'): toolCountryFill works as expected ───
y["DEU", , ] == 0 is not TRUE
is(actual) | is(expected)
[1] "magpie" - "logical" [1]
[2] "array" - "vector" [2]
[3] "structure" - "index" [3]
[4] "vector" - "replValue" [4]
- "numLike" [5]
- "atomicVector" [6]
`dim(actual)` is an integer vector (1, 1, 1)
`dim(expected)` is absent
`dimnames(actual)` is a list
`dimnames(expected)` is absent
── Failure ('test-toolCountryFill.R:22:3'): toolCountryFill works as expected ──
toolCountryFill(x3, 99, FRA = "DEU")["FRA", , ] == 42 is not TRUE
is(actual) | is(expected)
[1] "magpie" - "logical" [1]
[2] "array" - "vector" [2]
[3] "structure" - "index" [3]
[4] "vector" - "replValue" [4]
- "numLike" [5]
- "atomicVector" [6]
`dim(actual)` is an integer vector (1, 1, 1)
`dim(expected)` is absent
`dimnames(actual)` is a list
`dimnames(expected)` is absent
── Failure ('test-toolCountryFill.R:24:3'): toolCountryFill works as expected ──
y5["FRA", , ] == 0 is not TRUE
is(actual) | is(expected)
[1] "magpie" - "logical" [1]
[2] "array" - "vector" [2]
[3] "structure" - "index" [3]
[4] "vector" - "replValue" [4]
- "numLike" [5]
- "atomicVector" [6]
`dim(actual)` is an integer vector (1, 1, 1)
`dim(expected)` is absent
`dimnames(actual)` is a list
`dimnames(expected)` is absent
[ FAIL 3 | WARN 2 | SKIP 8 | PASS 581 ]
Error: Test failures
Execution halted
Flavor: r-devel-linux-x86_64-debian-clang
Current CRAN status: ERROR: 1, NOTE: 8, OK: 4
Version: 6.13.2
Check: tests
Result: ERROR
Running ‘testthat.R’ [7s/8s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(magclass)
>
> test_check("magclass")
[ FAIL 5 | WARN 0 | SKIP 3 | PASS 643 ]
══ Skipped tests (3) ═══════════════════════════════════════════════════════════
• {quitte} is not installed (2): 'test-as.magpie.R:22:3',
'test-as.magpie.R:63:3'
• {terra} is not installed (1): 'test-raster.R:1:1'
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-readwritemagpie.R:86:3'): handling of spatial data works ─────
`write.magpie(m10, file.path(td, "test.grd"))` threw an error with unexpected message.
Expected match: "no support for multiple variables"
Actual message: "The package \"raster\" is required!"
Backtrace:
▆
1. ├─testthat::expect_error(...) at test-readwritemagpie.R:86:3
2. │ └─testthat:::quasi_capture(...)
3. │ ├─testthat (local) .capture(...)
4. │ │ └─base::withCallingHandlers(...)
5. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
6. └─magclass::write.magpie(m10, file.path(td, "test.grd"))
── Error ('test-readwritemagpie.R:87:3'): handling of spatial data works ───────
Error in `write.magpie(m10, file.path(td, "test.nc"))`: The packages "ncdf4" and "terra" are required!
Backtrace:
▆
1. ├─testthat::expect_no_warning(write.magpie(m10, file.path(td, "test.nc"))) at test-readwritemagpie.R:87:3
2. │ └─testthat:::expect_no_(...)
3. │ └─testthat:::quasi_capture(enquo(object), NULL, capture)
4. │ ├─testthat (local) .capture(...)
5. │ │ └─rlang::try_fetch(...)
6. │ │ └─base::withCallingHandlers(...)
7. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
8. └─magclass::write.magpie(m10, file.path(td, "test.nc"))
── Failure ('test-readwritemagpie.R:157:3'): read/write triggers errors and warnings correctly ──
`write.magpie(as.magpie(1), "bla.nc")` threw an error with unexpected message.
Expected match: "No coordinates"
Actual message: "The packages \"ncdf4\" and \"terra\" are required!"
Backtrace:
▆
1. ├─testthat::expect_error(...) at test-readwritemagpie.R:157:3
2. │ └─testthat:::quasi_capture(...)
3. │ ├─testthat (local) .capture(...)
4. │ │ └─base::withCallingHandlers(...)
5. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
6. └─magclass::write.magpie(as.magpie(1), "bla.nc")
── Failure ('test-readwritemagpie.R:158:3'): read/write triggers errors and warnings correctly ──
`write.magpie(a, "blub.grd")` threw an error with unexpected message.
Expected match: "no support for multiple variables"
Actual message: "The package \"raster\" is required!"
Backtrace:
▆
1. ├─testthat::expect_error(write.magpie(a, "blub.grd"), "no support for multiple variables") at test-readwritemagpie.R:158:3
2. │ └─testthat:::quasi_capture(...)
3. │ ├─testthat (local) .capture(...)
4. │ │ └─base::withCallingHandlers(...)
5. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
6. └─magclass::write.magpie(a, "blub.grd")
── Failure ('test-readwritemagpie.R:159:3'): read/write triggers errors and warnings correctly ──
`write.magpie(a[, , 1], "blub.asc")` threw an error with unexpected message.
Expected match: "choose just one"
Actual message: "The package \"raster\" is required!"
Backtrace:
▆
1. ├─testthat::expect_error(write.magpie(a[, , 1], "blub.asc"), "choose just one") at test-readwritemagpie.R:159:3
2. │ └─testthat:::quasi_capture(...)
3. │ ├─testthat (local) .capture(...)
4. │ │ └─base::withCallingHandlers(...)
5. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
6. └─magclass::write.magpie(a[, , 1], "blub.asc")
[ FAIL 5 | WARN 0 | SKIP 3 | PASS 643 ]
Error: Test failures
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 6.13.2
Check: package dependencies
Result: NOTE
Packages suggested but not available for checking: 'lpjmlkit', 'quitte'
Flavors: r-patched-linux-x86_64, r-release-linux-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-oldrel-windows-x86_64
Version: 6.13.2
Check: package dependencies
Result: NOTE
Package suggested but not available for checking: 'quitte'
Flavors: r-release-windows-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64