CRAN Package Check Results for Maintainer ‘Alireza S. Mahani <alireza.s.mahani at gmail.com>’

Last updated on 2024-12-23 12:49:37 CET.

Package NOTE OK
BayesMixSurv 4 9
BSGW 13
CFC 10 3
DBR 1 12
EnsembleBase 10 3
EnsembleCV 3 10
EnsemblePCReg 3 10
EnsemblePenReg 3 10
MatchLinReg 13
MfUSampler 13
RegressionFactory 10 3
SAMUR 13
sns 13

Package BayesMixSurv

Current CRAN status: NOTE: 4, OK: 9

Version: 0.9.1
Check: Rd contents
Result: NOTE Auto-generated content requiring editing in Rd file 'BayesMixSurv.Rd': \keyword: ‘~kwd1’ \keyword: ‘~kwd2’ Auto-generated content requiring editing in Rd file 'BayesMixSurv_CrossVal.Rd': \keyword: ‘~kwd1’ \keyword: ‘~kwd2’ Auto-generated content requiring editing in Rd file 'plot_BayesMixSurv.Rd': \keyword: ‘~kwd1’ \keyword: ‘~kwd2’ Auto-generated content requiring editing in Rd file 'predict_BayesMixSurv.Rd': \keyword: ‘~kwd1’ \keyword: ‘~kwd2’ Auto-generated content requiring editing in Rd file 'summary_BayesMixSurv.Rd': \keyword: ‘~kwd1’ \keyword: ‘~kwd2’ Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-patched-linux-x86_64, r-release-linux-x86_64

Package BSGW

Current CRAN status: OK: 13

Package CFC

Current CRAN status: NOTE: 10, OK: 3

Version: 1.2.0
Check: Rd files
Result: NOTE checkRd: (-1) cfc.tbasis.Rd:23: Lost braces 23 | Assuming one-dimensional \code{p1} and \code{p2} for clarity, the algorithm calculates cumulative incidence function for cuase 1 using a recursive formula: \code{ci1[n+1] = ci1[n] + dci1[n]}, where \code{dci1[n] = 0.5*(p2[n] + p2[n+1])*(p1[n] - p1[n+1])}. The increment in cumulative incidence function for cause 2 is similarly calculated, \code{dci2[n] = 0.5*(p1[n] + p1[n+1])*(p2[n] - p2[n+1])}. These equations guarantee that \code{dci1[n] + dci2[n] = p1[n]*p2[n] - p1[n+1]*p2[n+1]}. Event-free probability is simply calculated as code{efp[n] = p1[n]*p2[n]}. Taken together, this numerical integration ensures that \code{efp[n+1] - efp[n] + dci1[n] + dci2[n] = 0}. | ^ Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64

Package DBR

Current CRAN status: NOTE: 1, OK: 12

Version: 1.4.1
Check: re-building of vignette outputs
Result: NOTE Error(s) in re-building vignettes: --- re-building ‘DBR.Rnw’ using Sweave DBR 1.4.1 Bayesian Discretized Beta Regression for the Analysis of Ratings Data Warning in cor.test.default(pain$severity, pain$interference, method = "spearman") : Cannot compute exact p-value with ties Warning in cor.test.default(pain$age, pain$interference, method = "spearman") : Cannot compute exact p-value with ties Warning in ks.test.default(pred_sample, pain$interference) : p-value will be approximate in the presence of ties Error: processing vignette 'DBR.Rnw' failed with diagnostics: Running 'texi2dvi' on 'DBR.tex' failed. LaTeX errors: ! LaTeX Error: File `breqn.sty' not found. Type X to quit or <RETURN> to proceed, or enter new name. (Default extension: sty) ! Emergency stop. <read *> l.18 \usepackage {atbegshi}% http://ctan.org/pkg/atbegshi^^M ! ==> Fatal error occurred, no output PDF file produced! --- failed re-building ‘DBR.Rnw’ SUMMARY: processing the following file failed: ‘DBR.Rnw’ Error: Vignette re-building failed. Execution halted Flavor: r-oldrel-macos-x86_64

Package EnsembleBase

Current CRAN status: NOTE: 10, OK: 3

Version: 1.0.2
Check: Rd files
Result: NOTE checkRd: (-1) ALL.Regression.Config-class.Rd:39: Lost braces 39 | \item{code{shrinkage}:}{Object of class \code{"numeric"}, defining the shrinkage parameter applied to each tree in expansion.} | ^ Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64

Version: 1.0.2
Check: Rd contents
Result: NOTE Auto-generated content requiring editing in Rd file 'validate-methods.Rd': \keyword: ‘~~ other possible keyword(s) ~~’ Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-patched-linux-x86_64, r-release-linux-x86_64

Package EnsembleCV

Current CRAN status: NOTE: 3, OK: 10

Version: 0.8
Check: Rd cross-references
Result: NOTE Found the following Rd file(s) with Rd \link{} targets missing package anchors: Regression.Select.MinAvgErr.Config-class.Rd: Instance.List-class, Regression.Select.Config-class Regression.Select.MinAvgErr.FitObj-class.Rd: Regression.Select.Config-class, RegressionSelectPred-class, Regression.Select.FitObj-class ecv.regression.Rd: Instance.List-class, Regression.CV.Batch.FitObj-class, Regression.Batch.FitObj-class ecv.regression.baselearner.control.Rd: rmse.error Please provide package anchors for all Rd \link{} targets not in the package itself and the base packages. Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-windows-x86_64

Package EnsemblePCReg

Current CRAN status: NOTE: 3, OK: 10

Version: 1.1.4
Check: Rd cross-references
Result: NOTE Found the following Rd file(s) with Rd \link{} targets missing package anchors: Regression.Integrator.PCR.SelMin.Config-class.Rd: Regression.Integrator.Config-class Regression.Integrator.PCR.SelMin.FitObj-class.Rd: Regression.Integrator.FitObj-class epcreg.Rd: Instance.List-class, Regression.CV.Batch.FitObj-class, Regression.Batch.FitObj-class epcreg.baselearner.control.Rd: rmse.error Please provide package anchors for all Rd \link{} targets not in the package itself and the base packages. Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-windows-x86_64

Package EnsemblePenReg

Current CRAN status: NOTE: 3, OK: 10

Version: 0.7
Check: Rd cross-references
Result: NOTE Found the following Rd file(s) with Rd \link{} targets missing package anchors: Regression.Integrator.PenReg.SelMin.Config-class.Rd: Regression.Integrator.Config-class Regression.Integrator.PenReg.SelMin.FitObj-class.Rd: Regression.Integrator.FitObj-class epenreg.Rd: Instance.List-class, Regression.CV.Batch.FitObj-class, Regression.Batch.FitObj-class epenreg.baselearner.control.Rd: rmse.error Please provide package anchors for all Rd \link{} targets not in the package itself and the base packages. Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-windows-x86_64

Package MatchLinReg

Current CRAN status: OK: 13

Package MfUSampler

Current CRAN status: OK: 13

Package RegressionFactory

Current CRAN status: NOTE: 10, OK: 3

Version: 0.7.4
Check: Rd files
Result: NOTE checkRd: (-1) fbase1.binomial.Rd:32: Lost braces; missing escapes or markup? 32 | In all base log-likelihood functions, we have dropped any additive terms that are independent of the distribution parameter, e.g. constant terms or those terms that are dependent on the response variable only. This is done for computational efficiency. Therefore, these functions cannot be used to obtain the absolute values of log-likelihood functions but only in the context of optimization and/or sampling. Users can write thin wrappers around these functions to add the constant terms to the function value. (Derivatives do not need correction. For binomial family, all factorial terms are ignored since they only depend on \code{n} and {y}.) | ^ Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64

Package SAMUR

Current CRAN status: OK: 13

Package sns

Current CRAN status: OK: 13