CRAN Package Check Results for Package MendelianRandomization

Last updated on 2020-08-11 21:48:32 CEST.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 0.4.2 20.23 156.10 176.33 ERROR
r-devel-linux-x86_64-debian-gcc 0.4.2 0.67 1.98 2.65 ERROR
r-devel-linux-x86_64-fedora-clang 0.4.2 215.58 ERROR
r-devel-linux-x86_64-fedora-gcc 0.4.3 208.46 OK
r-devel-windows-ix86+x86_64 0.4.2 46.00 171.00 217.00 OK
r-patched-linux-x86_64 0.4.2 20.25 153.18 173.43 ERROR
r-patched-solaris-x86 0.4.2 259.60 ERROR
r-release-linux-x86_64 0.4.2 0.63 2.52 3.15 ERROR
r-release-macos-x86_64 0.4.2 OK
r-release-windows-ix86+x86_64 0.4.2 48.00 223.00 271.00 OK
r-oldrel-macos-x86_64 0.4.2 OK
r-oldrel-windows-ix86+x86_64 0.4.2 30.00 149.00 179.00 OK

Check Details

Version: 0.4.2
Check: examples
Result: ERROR
    Running examples in 'MendelianRandomization-Ex.R' failed
    The error most likely occurred in:
    
    > base::assign(".ptime", proc.time(), pos = "CheckExEnv")
    > ### Name: phenoscanner
    > ### Title: PhenoScanner
    > ### Aliases: phenoscanner
    >
    > ### ** Examples
    >
    > # SNP
    > res <- phenoscanner(snpquery="rs10840293")
    Warning in file(con, "r") :
     URL 'http://www.phenoscanner.medschl.cam.ac.uk/api/?snpquery=rs10840293&catalogue=GWAS&p=1e-05&proxies=None&r2=0.8&build=37': status was 'Couldn't connect to server'
    Error in file(con, "r") :
     cannot open the connection to 'http://www.phenoscanner.medschl.cam.ac.uk/api/?snpquery=rs10840293&catalogue=GWAS&p=1e-05&proxies=None&r2=0.8&build=37'
    Calls: phenoscanner -> fromJSON -> paste -> readLines -> file
    Execution halted
Flavor: r-devel-linux-x86_64-debian-clang

Version: 0.4.2
Check: package dependencies
Result: ERROR
    Package required but not available: ‘plotly’
    
    See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
    manual.
Flavors: r-devel-linux-x86_64-debian-gcc, r-release-linux-x86_64

Version: 0.4.2
Check: examples
Result: ERROR
    Running examples in ‘MendelianRandomization-Ex.R’ failed
    The error most likely occurred in:
    
    > ### Name: phenoscanner
    > ### Title: PhenoScanner
    > ### Aliases: phenoscanner
    >
    > ### ** Examples
    >
    > # SNP
    > res <- phenoscanner(snpquery="rs10840293")
    Warning in file(con, "r") :
     URL 'http://www.phenoscanner.medschl.cam.ac.uk/api/?snpquery=rs10840293&catalogue=GWAS&p=1e-05&proxies=None&r2=0.8&build=37': status was 'Couldn't connect to server'
    Error in file(con, "r") :
     cannot open the connection to 'http://www.phenoscanner.medschl.cam.ac.uk/api/?snpquery=rs10840293&catalogue=GWAS&p=1e-05&proxies=None&r2=0.8&build=37'
    Calls: phenoscanner -> fromJSON -> paste -> readLines -> file
    Execution halted
Flavors: r-devel-linux-x86_64-fedora-clang, r-patched-solaris-x86

Version: 0.4.2
Check: examples
Result: ERROR
    Running examples in ‘MendelianRandomization-Ex.R’ failed
    The error most likely occurred in:
    
    > base::assign(".ptime", proc.time(), pos = "CheckExEnv")
    > ### Name: phenoscanner
    > ### Title: PhenoScanner
    > ### Aliases: phenoscanner
    >
    > ### ** Examples
    >
    > # SNP
    > res <- phenoscanner(snpquery="rs10840293")
    [1] "Error: no results found"
    Thank you for using the PhenoScanner tool. If you use these results, please ensure that you follow the terms and conditions of PhenoScanner (http://www.phenoscanner.medschl.cam.ac.uk/about/), including citing all of the relevant references of the data used and the PhenoScanner publication: Staley JR et al., Bioinformatics 2016; 32(20):3207-3209.
    > head(res$results)
    data frame with 0 columns and 0 rows
    > res$snps
    data frame with 0 columns and 0 rows
    >
    > # Gene
    > res <- phenoscanner(genequery="SWAP70")
    Warning in file(con, "r") :
     cannot open URL 'http://www.phenoscanner.medschl.cam.ac.uk/api/?genequery=SWAP70&catalogue=GWAS&p=1e-05&proxies=None&r2=1&build=37': HTTP status was '500 Internal Server Error'
    Error in file(con, "r") :
     cannot open the connection to 'http://www.phenoscanner.medschl.cam.ac.uk/api/?genequery=SWAP70&catalogue=GWAS&p=1e-05&proxies=None&r2=1&build=37'
    Calls: phenoscanner -> fromJSON -> paste -> readLines -> file
    Execution halted
Flavor: r-patched-linux-x86_64