>From the message, that Yohan shows,
it does indeed look a bit funny (a possible buglet in R-devel's checking ?).

  ("summary" , "sparseMatrix") is indeed a method from the Matrix package.

How exactly do you import Matrix (methods)?  Could it be that you should
change something there, e.g. if you define "summary" methods yourself?

Regards,
Martin

On Wed, Apr 14, 2010 at 09:24, Yohan Chalabi <chalabi@phys.ethz.ch> wrote:

> >>>> "KH" == Kurt Hornik <Kurt.Hornik@wu.ac.at>
> >>>> on Sun, 11 Apr 2010 10:11:33 +0200
>
>   KH> Dear maintainers,
>   KH>
>   KH> This concerns the packages
>   KH>
>   KH> bayesCGH fRegression
>   KH>
>   KH> maintained by one of you, for which R CMD check finds problems
>   KH> in the
>   KH> 'for missing documentation entries' check, see below for
>   KH> details.
>   KH>
>   KH> Can we pls have updates fixing these within the next 2 weeks?
>   KH>
>   KH> Note that other R CMD check problems may need to be addressed
>   KH> as well.
>   KH>
>   KH> Best
>   KH> -k
>   KH> [[...]]
>   KH>
>   KH> Package: fRegression Version: 2100.76 Flavor: r-devel-linux-ix86
>   KH> Check: for missing documentation entries ... WARNING
>   KH> Undocumented S4 methods:
>   KH> generic 'summary' and siglist 'sparseMatrix'
>   KH> All user-level objects in a package (including S4 classes
>   KH> and methods)
>   KH> should have documentation entries.
>   KH> See the chapter 'Writing R documentation files' in manual
>   KH> 'Writing R
>   KH> Extensions'.
>
> Hi Kurt,
>
> Thanks for your message.
>
> It looks like methods implemented in Matrix pkg has been saved in the
> wrong S4 method table. Was there any change in R-devel that affect how
> S4 methods are saved ?
>
> Regards,
> Yohan
>
> --
> PhD candidate
> Swiss Federal Institute of Technology
> Zurich
>
> www.ethz.ch
>
>

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