[R-sig-ME] how to code a hopefully simple mixed model with spatially autocorrelated variables
Tim Richter-Heitmann | Universitaet Bremen
tr|chter @end|ng |rom un|-bremen@de
Thu May 5 14:01:30 CEST 2022
Dear group,
i have the following data:
outcome: Abundance data (likely negative binomial or Poisson),
potentially autocorrelated
environmental predictors: 8 continuous variables, potentially
autocorrelated, potentially collinear.
A Spatial structure of the measurement: the depth of the measurement
into a sediment ("Core Depth"). Continuous, in cm. It has only one
dimension, like a gradient.
Location: a random effect. A factor with 7 levels with about 17 - 25
observations each. The location of the measurement on the seafloor.
These Locations are so far apart, that i cant imagine that they are
autocorrelated. Thus, id like to use it as factor.
I would like to model something like:
gls(Abundance ~ Predictors + 1|Location, correlation = corGaus(~Depth))
Here are some questions:
1. Is this ok? Since depth is linear and progressive, can it be
treated like a temporal structure? Or could Depth be also modelled as
a fixed effect? It is clear from the data that abundance varies by
Depth.
2. What would be the best way to select the best explaining variables?
3. How to get the negative binomial distribution of the outcome into
the model?
I am very curious about your advise.
Best, Tim
--
Dr. Tim Richter-Heitmann
University of Bremen
Microbial Ecophysiology Group (AG Friedrich)
FB02 - Biologie/Chemie
Leobener Straße (NW2 A2130)
D-28359 Bremen
Tel.: 0049(0)421 218-63062
Fax: 0049(0)421 218-63069
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