[R-sig-ME] testing OpenMP-enabled glmmTMB on various configurations

Guillaume Adeux gu|||@ume@|mon@@2 @end|ng |rom gm@||@com
Tue Jan 14 16:44:40 CET 2020

If, for once, I can be of any help to you... this is what I got:

> remotes::install_github("glmmTMB/glmmTMB/glmmTMB using conditional_openmp")Downloading GitHub repo glmmTMB/glmmTMB using conditional_openmpThese packages have more recent versions available.
Which would you like to update?

1:   All
2:   CRAN packages only
3:   None
4:   Rcpp      (1.0.1     -> 1.0.3    ) [CRAN]
5:   RcppEigen ( -> [CRAN]

Enter one or more numbers separated by spaces, or an empty line to
cancel1: 1Rcpp      (1.0.1     -> 1.0.3    ) [CRAN]
RcppEigen ( -> [CRAN]Installing 2 packages: Rcpp,
RcppEigentrying URL
type 'application/zip' length 3011719 bytes (2.9 MB)downloaded 2.9 MB
trying URL 'https://cran.rstudio.com/bin/windows/contrib/3.5/RcppEigen_0.'Content
type 'application/zip' length 2676104 bytes (2.6 MB)downloaded 2.6 MB
package ‘Rcpp’ successfully unpacked and MD5 sums checkedError:
(converted from warning) cannot remove prior installation of package



Le lun. 13 janv. 2020 à 23:04, Ben Bolker <bbolker using gmail.com> a écrit :

>   Hi folks,
>   We're trying to troubleshoot a version of glmmTMB that enables OpenMP
> support, but we have a fairly limited set of test platforms and it would
> be nice to know if many users are going to have installation difficulties.
>   If you have development tools (and the 'remotes' package) installed
> and a few free minutes, it would be great if you could try
> remotes::install_github("glmmTMB/glmmTMB/glmmTMB using conditional_openmp")
> and let us know if you have any trouble installing (it should install
> whether or not you have OpenMP enabled ...)
> If you're feeling energetic or distractible, you could try the tests here:
> https://github.com/glmmTMB/glmmTMB/issues/481#issuecomment-572767245
> the expected result is you should see *either* warnings that OpenMP is
> not enabled *or* at least some speed-up for the parallel version over
> the serial version.
> Results (especially problematic ones!) welcome at
> https://github.com/glmmTMB/glmmTMB/issues/481
> _______________________________________________
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> https://stat.ethz.ch/mailman/listinfo/r-sig-mixed-models

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