[R-sig-ME] Please help me to interpret this result

Sachiin M H @@chiin@mh @ending from gm@il@com
Tue Dec 4 22:58:27 CET 2018


Hi,
objective - to examine neighbourhood effects on individual survival at
multiple life history stages.

Kindly help me to interpret the results such as
survival rates of sapling = ...... , Juvenile= ........, adult= ......



Metadata

survival= alive 0 and dead 1, size = sapling, adult and juvenile, con
and het = con and heterospecific density at 5 m radius, INT = 1,2,3
census interval, sp= species codes, quadrat = 5 1ha sites *100
(10*10m) subplots.




summary(model5)Generalized linear mixed model fit by maximum
likelihood (Laplace Approximation) ['glmerMod']
 Family: binomial  ( cloglog )
Formula: survival ~ size + CON_5 + HET_5 + INT + (1 + size | sp) + (1
|      quadrat)
   Data: sf
 Offset: time
Control: glmerControl(optCtrl = list(maxfun = 20000))

     AIC      BIC   logLik deviance df.resid
 45063.2  45176.7 -22518.6  45037.2    45668

Scaled residuals:
    Min      1Q  Median      3Q     Max
-2.6449 -0.6093 -0.3445  0.6770  7.8842

Random effects:
 Groups  Name        Variance Std.Dev. Corr
 quadrat (Intercept) 0.20809  0.4562
 sp      (Intercept) 0.87971  0.9379
         sizeJ       0.03747  0.1936   -0.41
         sizeS       0.49247  0.7018   -0.82  0.86
Number of obs: 45681, groups:  quadrat, 500; sp, 60

Fixed effects:
            Estimate Std. Error z value Pr(>|z|)
(Intercept) -3.96230    0.17254 -22.965  < 2e-16 ***
sizeJ        0.68744    0.09500   7.236 4.62e-13 ***
sizeS        1.99743    0.14818  13.480  < 2e-16 ***
CON_5        0.11348    0.01215   9.337  < 2e-16 ***
HET_5        0.06551    0.01547   4.235 2.28e-05 ***
INT          0.32286    0.01358  23.769  < 2e-16 ***
---
Signif. codes:  0 ‘***’ 0.001 ‘**’ 0.01 ‘*’ 0.05 ‘.’ 0.1 ‘ ’ 1

Correlation of Fixed Effects:
      (Intr) sizeJ  sizeS  CON_5  HET_5
sizeJ -0.590
sizeS -0.857  0.767
CON_5 -0.022  0.000 -0.001
HET_5 -0.075  0.000  0.000  0.107
INT   -0.189  0.039  0.056  0.290  0.398
convergence code: 0
Model failed to converge with max|grad| = 0.00950462 (tol = 0.001, component 1)



-- 

Sachin Medigeshi Harish
Ph.D. student,
Dr. Dayanandan's Research Lab
Department of Biology
Concordia University - Loyola campus
Montreal, Quebec H4B 1R6, Canada

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