[R-sig-ME] R-sig-mixed-models Digest, Vol 141, Issue 1

[C. AMAL D. GLELE]

 Hi, dear Ben.
Many thanks for your suggestion.
Here is my need:
I've fitted a model using glmmadmb; my goal now is to get its estimates's
bootstrapped CI's  and/or p-values.
Best,

Le sam. 1 sept. 2018 à 12:09, <r-sig-mixed-models-request using r-project.org> a
écrit :

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> Today's Topics:
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>    1. alternative of_lmeresampler::bootstrap_ for objects of class
>       glmmTMB and/or glmmadmb (C. AMAL D. GLELE)
>    2. Re:  alternative of_lmeresampler::bootstrap_ for objects of
>       class glmmTMB and/or glmmadmb (Ben Bolker)
>
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> Message: 1
> Date: Fri, 31 Aug 2018 12:21:39 +0200
> From: "C. AMAL D. GLELE" <altessedac2 using gmail.com>
> To: R SIG Mixed Models <r-sig-mixed-models using r-project.org>
> Subject: [R-sig-ME] alternative of_lmeresampler::bootstrap_ for
>         objects of class glmmTMB and/or glmmadmb
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> Hi, dear all.
> Is there an alternative of lmeresampler::bootstrap for objects of class
> glmmTMB and/or glmmadmb?
> In advance, thanks for your help.
> Kind regards,
>
>         [[alternative HTML version deleted]]
>
>
>
>
> ------------------------------
>
> Message: 2
> Date: Fri, 31 Aug 2018 14:56:09 -0400
> From: Ben Bolker <bbolker using gmail.com>
> To: r-sig-mixed-models using r-project.org
> Subject: Re: [R-sig-ME]  alternative of_lmeresampler::bootstrap_ for
>         objects of class glmmTMB and/or glmmadmb
> Message-ID: <099de954-558f-db7a-8691-badace747c9c using gmail.com>
> Content-Type: text/plain; charset="utf-8"
>
>
>   Can you be more specific about what you'd like to do?  It looks like
> the lmeresampler::bootstrap functions might be adaptable to glmmTMB
> objects (i.e., not in their current form, but since they are mostly
> built on accessor methods that work similarly between glmmTMB and lme4,
> new generics could be rewritten without huge effort -- probably).
> However ... at a quick glance, it looks like only fully parametric
> bootstrapping and case-resampling will work for GLMMs rather than LMMs
> (and you're probably using glmmTMB/glmmADMB because you need some sort
> of exotic GLMM-type thing, not a LMM, anyway ...)
>
>
> You can also do parametric boostrapping with bootMer in glmmTMB, with
> the current CRAN lme4 and the parboot branch of glmmTMB, although there
> are still some bugs for binomial-type models:
> https://github.com/glmmTMB/glmmTMB/issues/375
>
> On 2018-08-31 06:21 AM, C. AMAL D. GLELE wrote:
> > Hi, dear all.
> > Is there an alternative of lmeresampler::bootstrap for objects of class
> > glmmTMB and/or glmmadmb?
> > In advance, thanks for your help.
> > Kind regards,
> >
> >       [[alternative HTML version deleted]]
> >
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