[R-sig-ME] correlation between random effects
Jana Dlouha
jana.dlouha at inra.fr
Tue Feb 13 10:00:39 CET 2018
Hi all,
I have a problem with a correlation between random effects. I have tested several models on my data:
m0<-lm(MCs~ dB1, data)
m1<- lmer(MCs~ dB1 + (1|Species), data, REML=FALSE)
m2 <- lmer(MCs~ dB1 + (-1+dB1|Species), data, REML=FALSE)
m3<- lmer(MCs~ dB1 + (1|Species)+(0+dB1|Species), data, REML=FALSE)
m4<- lmer(MCs ~ dB1 + (1+dB1 |Species), data,REML=FALSE)
and when I compare the AIC criterion, the lowest one is for the model m4:
m0 m1 m2 m3 m4
11086.51 10948.72 10828.75 10830.75 10720.43
However, in the summary I see that there is a strong correlation between random effects and associated variances are huge:
Random effects:
Groups Name Variance Std.Dev. Corr
Species (Intercept) 21.48 4.635
dB1 11.25 3.355 -1.00
Residual 6.19 2.488
Number of obs: 2221, groups: Species, 598
For m3, random effect associated with intercept has very low variance and residual variance is only a bit higher:
Random effects:
Groups Name Variance Std.Dev.
Species (Intercept) 3.419e-14 1.849e-07
Species.1 dB1 7.968e-01 8.927e-01
Residual 6.327e+00 2.515e+00
Number of obs: 2221, groups: Species, 598
I am tempted to take into account only the randon effect associated with the slope however I don't know if i can do this considering that the AIC is not the lowest one for this model and how to justify it in my paper?
By the way, I don't really understand why the variances associated with the random effects change so much.
I have tried to center the regressor dB1 which removed the correlation between fixed effects and changed the sign of correlation but random effects remain strongly correlated and variances large:
Random effects:
Groups Name Variance Std.Dev. Corr
Species (Intercept) 1.109 1.053
dB1c 11.255 3.355 0.94
Residual 6.190 2.488
Number of obs: 2221, groups: Species, 598
Could you please give me some hint to solve my problem? Thanks a lot in advance
Jana
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