[R-sig-ME] spatial covariance structure in glmmTMB

[Mollie Brooks]

Hi Alice,

Have you looked at the vignette on covariance structures? There's a section
on spatial correlations.

https://cran.r-project.org/web/packages/glmmTMB/vignettes/covstruct.html

cheers,
Mollie

On Mon, Oct 9, 2017 at 3:22 PM, Alice Domalik <adomalik at sfu.ca> wrote:

> Dear list,
>
> I am fitting mixed effects models using the package glmmTMB to investigate
> habitat use.
> My current model has the form m1<-glmmTMB(count~waterdepth + temperature +
> chl.conc + (1|individual), family=list(family="truncated_nbinom1",
> link="log"), data=mydata)
> I would like to add a spatial covariance structure based on geographic
> coordinates (mydata$x and mydata$y).
> However, I do not know how to modify my model formula to include a spatial
> covariance structure. Does anyone have example code to show how this is
> done?
>
> Any help would be much appreciated!
>
>
>
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