[R-sig-ME] LMER: Visualizing three-way interaction

Klemens Knöferle knoeferle at gmail.com
Wed Apr 12 11:41:00 CEST 2017


Hi all,

I'm trying to visualize a three-way interaction from a rather complex
linear mixed model in R (lmer function from the lme4 package; the model has
a complex random-effects structure). The interaction consists of two
continuous variables and one categorical variable (two experimental
conditions).

So far, I have graphed the interaction via two 3D-surface plots using
visreg2d from the visreg package. But my reviewers found these plots
confusing and asked for a different illustration, such as conditional
coefficient plots (i.e., plots of the strength of coefficient 1 as
coefficient 2 increases).

I've tried to find a package that allows me to create these kind of plots,
but failed. The existing packages only allow coefficient plots for two-way
interactions (for instance the interplot package;
https://cran.r-project.org/web/packages/interplot/vignettes/interplot-vignette.html).
That means I only get a conditional coefficient plot of the two-way
interaction, collapsed across both levels of the categorical variable.

Is there a package for my case? If not, I probably have to manually extract
fitted values from my model (e.g., using broom) and somehow plot them in
ggplot2. But I don't really know how to do this, whether or not to take
into account random effects (and how), etc. Any ideas would be much
appreciated...

Klemens Knöferle, Ph.D.
Associate Professor - Department of Marketing
BI Norwegian Business School
Visiting address: Nydalsveien 37, 0484 Oslo

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