[R-sig-ME] false convergence of lmer model
Ben Bolker
bbolker at gmail.com
Wed Jul 24 15:08:45 CEST 2013
On 13-07-24 03:21 AM, Tara Woud wrote:
> Hi Ben,
>
> That sounds great, but I got the same error as Neil when entering the
> installation code.
>
> Tara
will be fixed in web page shortly
Ben
>
>
> 2013/7/24 Neil Collier <neilandertal at gmail.com
> <mailto:neilandertal at gmail.com>>
>
> Hi Ben,
>
> I think there is a typo in the installation code for lme4 from github:
>
> install.packages("lme4",
> repos=c("http://lme4.r-forge.r-project.org/repos",
> getOptions("repos")["CRAN"]))
>
> Message from R:
>
> install.packages("lme4",
> repos=c("http://lme4.r-forge.r-project.org/repos",
> getOptions("repos")["CRAN"]))
> Error in install.packages("lme4", repos = c("
> http://lme4.r-forge.r-project.org/repos", :
> could not find function "getOptions"
>
> getOption not getOptions works.
>
> Cheers,
>
> Neil
>
>
> On Tue, Jul 23, 2013 at 10:54 PM, Ben Bolker <bbolker at gmail.com
> <mailto:bbolker at gmail.com>> wrote:
>
> > Tara Woud <t.y.woud at ...> writes:
> >
> > >
> > > Dear all,
> > >
> > > To determine the effect of weather parameters on the amount of
> core areas
> > > of mallards (71 different mallards with measurements on several
> days),
> > I'm
> > > trying to fit the following model to my data:
> > >
> > > model1 <- lmer(Core_areas ~ c_MaxTemp + I(c_MaxTemp^2) +
> c_MinTemp + I(
> > > c_MinTemp^2) + c_GemTemp + I(c_GemTemp^2) + c_D.rain + c_S.rain +
> > c_Gemwind +
> > > c_Hwind + c_Lwind + (1 | Mallard) # random slope | random
> factor (here
> > > individual is random factor), family = poisson)
> > >
> > > But then I get the following warning message:
> > >
> > > In mer_finalize(ans) : false convergence (8)
> > > What consequences does this have? And had anybody an idea how I
> can solve
> > > this??
> > >
> > > Best,
> > >
> > > Tara
> > >
> >
> > [snip]
> >
> > Are you willing to try out the development version of lme4
> > (which will, hopefully, be released and become the CRAN version
> > in about a week anyway)? See the Installation section at
> > https://github.com/lme4/lme4/blob/master/README.md ...
> >
> > The new version tends to have fewer problems with false convergence
> > and more flexibility for exploring and fixing convergence problems
> > if they do occur.
> >
> > Ben Bolker
> >
> > _______________________________________________
> > R-sig-mixed-models at r-project.org
> <mailto:R-sig-mixed-models at r-project.org> mailing list
> > https://stat.ethz.ch/mailman/listinfo/r-sig-mixed-models
> >
>
> [[alternative HTML version deleted]]
>
> _______________________________________________
> R-sig-mixed-models at r-project.org
> <mailto:R-sig-mixed-models at r-project.org> mailing list
> https://stat.ethz.ch/mailman/listinfo/r-sig-mixed-models
>
>
More information about the R-sig-mixed-models
mailing list