[R-sig-ME] GAMM4: In mer_finalize(ans) : false convergence (8)
nevaeh_ at web.de
nevaeh_ at web.de
Sun Aug 14 12:55:12 CEST 2011
Hi all,
I know there are already some topics on the warning "In mer_finalize(ans) : false convergence (8)" but none of the advice given there could help me solving the problem.
Here's what I'm trying to do: I have a dataset on 400 (700 for the other group, I had to split the dataset) individuals. There are repeated measurements per individual (for some only one, for others more than 10) which is why I introduced a random effect for the individuals. The dependent variable is binary (0/1), and I fit a spline for the time trend, because it's especially interesting to see the trend in time for the dependent variable. The independent variables are age, binary variables and categorial variables with up to 4 categories.
For the analysis I used the gamm4 function:
model <- gamm4(aim ~ age+ s(time, bs="cr") + kat1 + bin1 + kat2 + kat3 + bin2 +
kat4+ bin3 + bin4 + bin5,
random=~ (1|ID) , family=binomial(link = "logit"),
data=data)
Whenever I'm running this I get the warning "In mer_finalize(ans) : false convergence (8)".
I already tried verbose=TRUE which made no difference and I also tried it with standardized or logarithmic age which both did not help (age is not normally distributed). If I only take one or two of the categorial/binary variables there is no problem but if there are more independent variables in the model, I always get the warning.
Can anyone help me what else I could try in order to get it work properly? I'm scared this is all not reliable as long as I get the warning message.
The output is the following:
Generalized linear mixed model fit by the Laplace approximation
AIC BIC logLik deviance
3886 4019 -1923 3846
Random effects:
Groups Name Variance Std.Dev.
ID (Intercept) 7.5614e+00 2.7498e+00
Xr.1 s(time) 8.1108e-25 9.0060e-13
Number of obs: 5656, groups: ID, 621; Xr.1, 8
Fixed effects:
Estimate Std. Error z value Pr(>|z|)
X(Intercept) -10.53860 1.56384 -6.739 1.60e-11 ***
Xage 0.29204 0.03091 9.449 < 2e-16 ***
Xkat12 -0.12581 0.30125 -0.418 0.6762
Xkat13 0.26185 0.38071 0.688 0.4916
Xbin11 0.22787 0.19604 1.162 0.2451
Xkat22 0.09542 0.32195 0.296 0.7669
Xkat23 1.19255 0.49638 2.402 0.0163 *
Xkat24 0.79042 0.66865 1.182 0.2372
Xkat32 -0.36311 0.27997 -1.297 0.1946
Xkat33 -1.55390 0.67783 -2.292 0.0219 *
Xkat34 12.31324 975.77796 0.013 0.9899
Xbin21 -0.25221 0.26531 -0.951 0.3418
Xkat42 -0.27021 0.73140 -0.369 0.7118
Xkat43 0.50828 0.73869 0.688 0.4914
Xbin32 -0.04130 0.30818 -0.134 0.8934
Xbin41 0.43754 0.92027 0.475 0.6345
Xbin52 -1.38775 0.33668 -4.122 3.76e-05 ***
Xs(time)Fx1 1.52712 0.23391 6.529 6.63e-11 ***
---
Signif. codes: 0 ‘***’ 0.001 ‘**’ 0.01 ‘*’ 0.05 ‘.’ 0.1 ‘ ’ 1
Correlation of Fixed Effects:
X(Int) Xage Xkat12 Xkat13 Xbin11 Xkat22 Xkat23 Xkat24 Xkat32 Xkat33 Xkat34 Xbin22 Xkat42 Xkat43 Xbin32 Xbin41 Xbin52
Xage -0.847
Xkat12 0.082 -0.179
Xkat13 0.089 -0.131 0.354
Xbin11 -0.105 0.023 0.005 -0.003
Xkat22 -0.132 -0.042 0.002 0.006 -0.006
Xkat23 -0.080 -0.044 -0.016 -0.030 0.005 0.361
Xkat24 -0.036 -0.050 -0.032 -0.013 0.033 0.247 0.162
Xkat32 -0.001 -0.080 -0.071 -0.182 0.001 0.012 -0.037 -0.078
Xkat33 0.053 -0.068 -0.029 -0.053 -0.019 -0.053 -0.049 -0.174 0.247
Xkat34 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000
Xbin22 0.008 -0.065 0.053 0.020 -0.004 0.007 0.016 0.013 -0.037 0.012 0.000
Xkat42 -0.440 0.003 0.002 -0.022 0.010 0.022 0.069 0.042 -0.015 -0.013 0.000 -0.089
Xkat43 -0.474 0.031 -0.005 -0.044 0.025 0.106 0.099 0.057 0.017 -0.022 0.000 -0.086 0.915
Xbin32 -0.123 -0.061 -0.032 -0.045 -0.034 0.071 0.032 0.100 -0.078 -0.093 0.000 0.000 0.083 0.095
Xbin41 -0.266 0.258 -0.005 -0.094 0.005 -0.036 0.019 -0.066 0.032 0.034 0.000 0.028 0.087 0.063 -0.023
Xbin52 -0.277 0.203 0.003 -0.018 0.355 0.292 0.178 0.084 0.014 -0.014 0.000 -0.019 -0.014 -0.105 -0.067 0.035
Xs(time)Fx1 0.007 0.021 0.003 0.009 -0.261 0.006 0.008 -0.007 -0.012 -0.002 0.000 -0.012 0.001 0.005 0.000 0.007 -0.119
$gam
Family: binomial
Link function: logit
Formula:
aim ~ age+ s(time, bs="cr") + kat1 + bin1 + kat2 + kat3 + bin2 +
kat4+ bin3 + bin4 + bin5
Estimated degrees of freedom:
1 total = 18
glmer.ML score: 3846.487
I'd be really thankful for any help,
Caro
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