[R-sig-ME] Problem with library(lme4a)

[Ben Bolker]

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  Hmmm.

  I believe the key is

Library not loaded: /usr/local/lib/libgfortran.2.dylib

  I think this is happening because I had Xcode installed on my machine,
which includes a copy of libfortran.2.dylib in /usr/local/lib, on it
when I built the binary, so that's where R is looking for it.  R
installs its own version in
/Library/Frameworks/R.framework/Versions/2.13/Resources/lib/ , but
that's not where it's being told to look.

  Possible solutions:

* see if the binary version on R-forge happens to be working right now
(install.packages(...,repos="http://r-forge.r-project.org"))
* wait for me to figure out how to build a version that looks in the
right place and put it up on the specialized lme4 repository
* install Xcode (at which point you should also be able to build your
own version from source ... ?)
* open a terminal window and
  (1) locate libfortran.2.dylib
     [confirm that the library is where I think it is]
  (2) cd /usr/local/lib
  (3) sudo ln -s
/Library/Frameworks/R.framework/Versions/2.13/Resources/lib/libgfortran.2.dylib


On 11-07-12 05:37 PM, zlistserv at gmail.com wrote:
> I'm trying to use lme4a but the library will not load on my Macintosh.  I'd appreciate any advice about how to make this work.
> 
> Thanks,
> 
> 
> R> install.packages("lme4a",repos="http://lme4.r-forge.r-project.org/repos")
> Warning: dependencies ‘minqa’, ‘MatrixModels’ are not available
> trying URL 'http://lme4.r-forge.r-project.org/repos/bin/macosx/leopard/contrib/2.13/lme4a_0.999375-65.tgz'
> Content type 'application/x-gzip' length 1614159 bytes (1.5 Mb)
> opened URL
> ==================================================
> downloaded 1.5 Mb
> 
> 
> The downloaded packages are in
> 	/var/folders/LS/LStjA81JFEGCAHYOkVFg9++++TM/-Tmp-//RtmpEMKs1i/downloaded_packages
> 
> 
> R> install.packages("minqa")
> trying URL 'http://software.rc.fas.harvard.edu/mirrors/R/bin/macosx/leopard/contrib/2.13/minqa_1.1.15.tgz'
> Content type 'application/x-gzip' length 950183 bytes (927 Kb)
> opened URL
> ==================================================
> downloaded 927 Kb
> 
> 
> The downloaded packages are in
> 	/var/folders/LS/LStjA81JFEGCAHYOkVFg9++++TM/-Tmp-//RtmpEMKs1i/downloaded_packages
> 
> 
> R> install.packages("MatrixModels")
> trying URL 'http://software.rc.fas.harvard.edu/mirrors/R/bin/macosx/leopard/contrib/2.13/MatrixModels_0.2-1.tgz'
> Content type 'application/x-gzip' length 152736 bytes (149 Kb)
> opened URL
> ==================================================
> downloaded 149 Kb
> 
> 
> The downloaded packages are in
> 	/var/folders/LS/LStjA81JFEGCAHYOkVFg9++++TM/-Tmp-//RtmpEMKs1i/downloaded_packages
> 
> 
> R> library(lme4a)
> Loading required package: minqa
> Loading required package: Rcpp
> Loading required package: MatrixModels
> Error in dyn.load(file, DLLpath = DLLpath, ...) : 
>   unable to load shared object '/Library/Frameworks/R.framework/Versions/2.13/Resources/library/lme4a/libs/x86_64/lme4a.so':
>   dlopen(/Library/Frameworks/R.framework/Versions/2.13/Resources/library/lme4a/libs/x86_64/lme4a.so, 6): Library not loaded: /usr/local/lib/libgfortran.2.dylib
>   Referenced from: /Library/Frameworks/R.framework/Versions/2.13/Resources/library/lme4a/libs/x86_64/lme4a.so
>   Reason: image not found
> Error: package/namespace load failed for 'lme4a'
> 
> 
> R> sessionInfo()
> R version 2.13.1 (2011-07-08)
> Platform: x86_64-apple-darwin9.8.0/x86_64 (64-bit)
> 
> locale:
> [1] en_US.UTF-8/en_US.UTF-8/C/C/en_US.UTF-8/en_US.UTF-8
> 
> attached base packages:
> [1] datasets  splines   utils     grDevices graphics  stats     methods   base     
> 
> other attached packages:
>  [1] MatrixModels_0.2-1 minqa_1.1.15       Rcpp_0.9.4         zUtil_0.08         xtable_1.5-6       multcomp_1.2-5    
>  [7] mvtnorm_0.9-96     lme4_0.999375-39   Matrix_0.999375-50 lattice_0.19-30    Hmisc_3.8-3        foreign_0.8-44    
> [13] car_2.0-10         survival_2.36-9    nnet_7.3-1         MASS_7.3-13       
> 
> loaded via a namespace (and not attached):
> [1] cluster_1.14.0 grid_2.13.1    nlme_3.1-101   stats4_2.13.1  tools_2.13.1  
> 
> _______________________________________________
> R-sig-mixed-models at r-project.org mailing list
> https://stat.ethz.ch/mailman/listinfo/r-sig-mixed-models

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