[R-sig-ME] lme4a crash
Ben Bolker
bbolker at gmail.com
Wed Jun 29 20:46:44 CEST 2011
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On 06/29/2011 03:24 AM, Christopher Philipson wrote:
> Hi Ben and mixed modellers,
>
> My apologies. The link you provided is useful, I am working on a simpler example that produces the problem.
>
> The nlmer() model is:
>
> power.law_light2 <- deriv(expression((( ( M0 )^(1-beta)) + (exp(Amax_Int + Amax_Slope * x2))*(1-beta)*x1)^(1/(1-beta))),
> c("M0", "Amax_Int","Amax_Slope", "beta"), function(x1, x2, M0, Amax_Int, Amax_Slope, beta) {})
>
> nlmer1<- nlmer(total.mass ~ power.law_light2(day, Treatment, M0, Amax_Int, Amax_Slope, beta) ~
> 0 + M0 + Amax_Int + Amax_Slope + beta
> + (0 + M0 |Seedling_no2)
> + (0 + Amax_Int|Seedling_no2)
> + (0 + beta |Seedling_no2),
> datNEW,
> start=mystart,
> verbose=TRUE);
>
>
> In the mean time I have established that R64, does not crash but produces the following error message:
>
> Error in bobyqa(ans at re@theta, obj, ans at re@lower, control = control) :
> non-finite objective values not allowed
> In addition: Warning message:
> In log(.expr8) : NaNs produced
>
> I will try to produce an example that does repeats this
Thanks.
The core dump is not so useful (although perhaps one of the other lme4
authors will find it so), but bandwidth is cheap.
Just for general information: we have had trouble, for some time now,
managing to set up the lme4a code (which has lots of shiny Rcpp stuff
under the surface) so that errors emanating from inside C++ code are
caught correctly and passed back to the R "surface" rather than crashing
R. As in your case, the results seem to be platform-dependent.
We have some examples to work on (and just lack time, and in my case
knowledge, to spend tracking down and fixing the problems), but another
example would still be welcome.
Of course, even if the program "only" stops with an error rather than
crashing you will still have a problem (albeit a less annoying one), in
that the optimization heads to a point that produces NaNs. In the
spirit of working around that problem, here are a couple of thoughts:
* can you specify "better" starting values, e.g. by starting with the
fixed-effect analogue of the model above? (Perhaps you are already
doing this.)
* your model is very complicated. I hope you have a big data set ...
does it work if you eliminate one or more of the random effects? Can
you use that approach to sneak up on better starting values?
* there doesn't seem to be anything in your model that wouldn't work
with nlme (i.e. no crossed random effects -- although if your data set
is big nlmer will probably be faster than nlme). Have you tried it in
nlme, perhaps with a subset of the data to start?
>
> The sessionInfo() is: [note I have the same situation with r2.13]
> R version 2.14.0 Under development (unstable) (2011-06-26 r56223)
> Platform: x86_64-apple-darwin9.8.0/x86_64 (64-bit)
>
> locale:
> [1] en_GB.UTF-8/en_GB.UTF-8/en_GB.UTF-8/C/en_GB.UTF-8/en_GB.UTF-8
>
> attached base packages:
> [1] stats graphics grDevices utils datasets methods base
>
> other attached packages:
> [1] lme4a_0.999375-67 MatrixModels_0.2-1 minqa_1.1.15 Rcpp_0.9.4 Matrix_0.999375-50 lattice_0.19-26
>
> loaded via a namespace (and not attached):
> [1] codetools_0.2-8 grid_2.14.0 nlme_3.1-101 splines_2.14.0 tools_2.14.0
>
> Many thanks and apologies for lack of previous details.
>
>
> Cheers
> Chris
>
> R 32-bit message when nlmer() crashes r.
> Process: R [3850]
> Path: /Applications/R.app/Contents/MacOS/R
> Identifier: org.R-project.R
> Version: R for Mac OS X GUI 1.40-devel Leopard build 32-bit (5862)
> Code Type: X86 (Native)
> Parent Process: launchd [112]
>
> Date/Time: 2011-06-29 09:13:06.737 +0200
> OS Version: Mac OS X 10.6.8 (10K540)
> Report Version: 6
>
> Interval Since Last Report: 78981 sec
> Crashes Since Last Report: 84
> Per-App Interval Since Last Report: 1581 sec
> Per-App Crashes Since Last Report: 1
> Anonymous UUID: F882E507-864C-4DA4-BDFF-C104FBB881C2
>
> Exception Type: EXC_CRASH (SIGABRT)
> Exception Codes: 0x0000000000000000, 0x0000000000000000
> Crashed Thread: 0 Dispatch queue: com.apple.main-thread
>
> Application Specific Information:
> abort() called
>
> Thread 0 Crashed: Dispatch queue: com.apple.main-thread
> 0 libSystem.B.dylib 0x923b4c5a __kill + 10
> 1 libSystem.B.dylib 0x923b4c4c kill$UNIX2003 + 32
> 2 libSystem.B.dylib 0x924475a5 raise + 26
> 3 libSystem.B.dylib 0x9245d6e4 abort + 93
> 4 libstdc++.6.dylib 0x99ba4fda __gnu_cxx::__verbose_terminate_handler() + 433
> 5 libstdc++.6.dylib 0x99ba317a __cxxabiv1::__terminate(void (*)()) + 10
> 6 libstdc++.6.dylib 0x99ba31ba __cxxabiv1::__unexpected(void (*)()) + 0
> 7 libstdc++.6.dylib 0x99ba32b8 __gxx_exception_cleanup(_Unwind_Reason_Code, _Unwind_Exception*) + 0
> 8 minqa.so 0x27c54f00 calfun_ + 688
> 9 minqa.so 0x27c5a61f prelim_ + 863
> 10 minqa.so 0x27c50cc0 bobyqb_ + 272
> 11 minqa.so 0x27c50b1b bobyqa_ + 731
> 12 minqa.so 0x27c55ff5 bobyqa_cpp + 1029
> 13 libR.dylib 0x00124811 do_dotcall + 1009 (dotcode.c:856)
> 14 libR.dylib 0x00152ef1 Rf_eval + 1777 (eval.c:495)
> 15 libR.dylib 0x00156066 do_set + 678 (eval.c:1709)
> 16 libR.dylib 0x00152cf2 Rf_eval + 1266 (eval.c:469)
> 17 libR.dylib 0x001549c7 do_begin + 327 (eval.c:1407)
> 18 libR.dylib 0x00152cf2 Rf_eval + 1266 (eval.c:469)
> 19 libR.dylib 0x00157d31 Rf_applyClosure + 833 (eval.c:825)
> 20 libR.dylib 0x00152bf2 Rf_eval + 1010 (eval.c:513)
> 21 libR.dylib 0x00156066 do_set + 678 (eval.c:1709)
> 22 libR.dylib 0x00152cf2 Rf_eval + 1266 (eval.c:469)
> 23 libR.dylib 0x001549c7 do_begin + 327 (eval.c:1407)
> 24 libR.dylib 0x00152cf2 Rf_eval + 1266 (eval.c:469)
> 25 libR.dylib 0x00157d31 Rf_applyClosure + 833 (eval.c:825)
> 26 libR.dylib 0x00152bf2 Rf_eval + 1010 (eval.c:513)
> 27 libR.dylib 0x001549c7 do_begin + 327 (eval.c:1407)
> 28 libR.dylib 0x00152cf2 Rf_eval + 1266 (eval.c:469)
> 29 libR.dylib 0x00157d31 Rf_applyClosure + 833 (eval.c:825)
> 30 libR.dylib 0x00152bf2 Rf_eval + 1010 (eval.c:513)
> 31 libR.dylib 0x00156066 do_set + 678 (eval.c:1709)
> 32 libR.dylib 0x00152cf2 Rf_eval + 1266 (eval.c:469)
> 33 libR.dylib 0x0018dd51 R_ReplDLLdo1 + 513 (main.c:358)
> 34 org.R-project.R 0x0001f4ac run_REngineRmainloop + 252
> 35 org.R-project.R 0x0001474c -[REngine runREPL] + 284
> 36 org.R-project.R 0x00002600 main + 1024
> 37 org.R-project.R 0x00002046 start + 54
>
> Thread 1: Dispatch queue: com.apple.libdispatch-manager
> 0 libSystem.B.dylib 0x9237a382 kevent + 10
> 1 libSystem.B.dylib 0x9237aa9c _dispatch_mgr_invoke + 215
> 2 libSystem.B.dylib 0x92379f59 _dispatch_queue_invoke + 163
> 3 libSystem.B.dylib 0x92379cfe _dispatch_worker_thread2 + 240
> 4 libSystem.B.dylib 0x92379781 _pthread_wqthread + 390
> 5 libSystem.B.dylib 0x923795c6 start_wqthread + 30
>
> Thread 2:
> 0 libobjc.A.dylib 0x99a27fa0 objc_msgSend + 48
> 1 com.apple.Foundation 0x9046f352 -[NSDistantObject methodSignatureForSelector:] + 192
> 2 com.apple.CoreFoundation 0x9194a9c0 ___forwarding___ + 320
> 3 com.apple.CoreFoundation 0x9194a802 _CF_forwarding_prep_0 + 50
> 4 org.R-project.R 0x00011465 -[RController readThread:] + 2181
> 5 com.apple.Foundation 0x90417564 -[NSThread main] + 45
> 6 com.apple.Foundation 0x90417514 __NSThread__main__ + 1499
> 7 libSystem.B.dylib 0x92381259 _pthread_start + 345
> 8 libSystem.B.dylib 0x923810de thread_start + 34
>
> Thread 3: com.apple.CFSocket.private
> 0 libSystem.B.dylib 0x92372ac6 select$DARWIN_EXTSN + 10
> 1 com.apple.CoreFoundation 0x9194cc83 __CFSocketManager + 1091
> 2 libSystem.B.dylib 0x92381259 _pthread_start + 345
> 3 libSystem.B.dylib 0x923810de thread_start + 34
>
> Thread 4:
> 0 libSystem.B.dylib 0x92353afa mach_msg_trap + 10
> 1 libSystem.B.dylib 0x92354267 mach_msg + 68
> 2 com.apple.CoreFoundation 0x9190d30f __CFRunLoopRun + 2079
> 3 com.apple.CoreFoundation 0x9190c3f4 CFRunLoopRunSpecific + 452
> 4 com.apple.CoreFoundation 0x9190c221 CFRunLoopRunInMode + 97
> 5 com.apple.Foundation 0x904502c4 +[NSURLConnection(NSURLConnectionReallyInternal) _resourceLoadLoop:] + 329
> 6 com.apple.Foundation 0x90417564 -[NSThread main] + 45
> 7 com.apple.Foundation 0x90417514 __NSThread__main__ + 1499
> 8 libSystem.B.dylib 0x92381259 _pthread_start + 345
> 9 libSystem.B.dylib 0x923810de thread_start + 34
>
> Thread 5:
> 0 libSystem.B.dylib 0x92379412 __workq_kernreturn + 10
> 1 libSystem.B.dylib 0x923799a8 _pthread_wqthread + 941
> 2 libSystem.B.dylib 0x923795c6 start_wqthread + 30
>
> Thread 6:
> 0 libSystem.B.dylib 0x92379412 __workq_kernreturn + 10
> 1 libSystem.B.dylib 0x923799a8 _pthread_wqthread + 941
> 2 libSystem.B.dylib 0x923795c6 start_wqthread + 30
>
> Thread 7:
> 0 libSystem.B.dylib 0x92379412 __workq_kernreturn + 10
> 1 libSystem.B.dylib 0x923799a8 _pthread_wqthread + 941
> 2 libSystem.B.dylib 0x923795c6 start_wqthread + 30
>
> Thread 8:
> 0 libSystem.B.dylib 0x92381aa2 __semwait_signal + 10
> 1 libSystem.B.dylib 0x923ad9c5 nanosleep$UNIX2003 + 188
> 2 libSystem.B.dylib 0x923ad903 usleep$UNIX2003 + 61
> 3 com.apple.AppKit 0x95b52e2d -[NSUIHeartBeat _heartBeatThread:] + 2039
> 4 com.apple.Foundation 0x90417564 -[NSThread main] + 45
> 5 com.apple.Foundation 0x90417514 __NSThread__main__ + 1499
> 6 libSystem.B.dylib 0x92381259 _pthread_start + 345
> 7 libSystem.B.dylib 0x923810de thread_start + 34
>
> Thread 0 crashed with X86 Thread State (32-bit):
> eax: 0x00000000 ebx: 0x9245d693 ecx: 0xbfffdd1c edx: 0x923b4c5a
> edi: 0xa02d4b30 esi: 0x251b4b4c ebp: 0xbfffdd38 esp: 0xbfffdd1c
> ss: 0x0000001f efl: 0x00000282 eip: 0x923b4c5a cs: 0x00000007
> ds: 0x0000001f es: 0x0000001f fs: 0x00000000 gs: 0x00000037
> cr2: 0xa02e6020
>
> Binary Images:
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> 0x922e7000 - 0x922e7ff7 com.apple.Carbon 150 (152) <9252D5F2-462D-2C15-80F3-109644D6F704> /System/Library/Frameworks/Carbon.framework/Versions/A/Carbon
> 0x92321000 - 0x92352ff7 libGLImage.dylib ??? (???) <0EE86397-A867-0BBA-E5B1-B800E43FC5CF> /System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libGLImage.dylib
> 0x92353000 - 0x924faff7 libSystem.B.dylib 125.2.11 (compatibility 1.0.0) <2DCD13E3-1BD1-6F25-119A-3863A3848B90> /usr/lib/libSystem.B.dylib
> 0x9344e000 - 0x934c9fff com.apple.AppleVAFramework 4.10.26 (4.10.26) <B293EC46-9F71-F448-F0E7-2960DC6DAEF7> /System/Library/PrivateFrameworks/AppleVA.framework/Versions/A/AppleVA
> 0x934ca000 - 0x935a4fff com.apple.DesktopServices 1.5.11 (1.5.11) <800F2040-9211-81A7-B438-7712BF51DEE3> /System/Library/PrivateFrameworks/DesktopServicesPriv.framework/Versions/A/DesktopServicesPriv
> 0x935a5000 - 0x9364dffb com.apple.QD 3.36 (???) <FA2785A4-BB69-DCB4-3BA3-7C89A82CAB41> /System/Library/Frameworks/ApplicationServices.framework/Versions/A/Frameworks/QD.framework/Versions/A/QD
> 0x9364e000 - 0x93681fff libTrueTypeScaler.dylib ??? (???) <0F04DAC3-829A-FA1B-E9D0-1E9505713C5C> /System/Library/Frameworks/ApplicationServices.framework/Versions/A/Frameworks/ATS.framework/Versions/A/Resources/libTrueTypeScaler.dylib
> 0x93682000 - 0x93685ff7 libCoreVMClient.dylib ??? (???) <F58BDFC1-7408-53C8-0B08-48BA2F25CA43> /System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libCoreVMClient.dylib
> 0x93701000 - 0x9379cfe7 com.apple.ApplicationServices.ATS 275.16 (???) <873C8B8A-B563-50F7-7628-524EE9E8DF0F> /System/Library/Frameworks/ApplicationServices.framework/Versions/A/Frameworks/ATS.framework/Versions/A/ATS
> 0x9379d000 - 0x937a2ff7 com.apple.OpenDirectory 10.6 (10.6) <C1B46982-7D3B-3CC4-3BC2-3E4B595F0231> /System/Library/Frameworks/OpenDirectory.framework/Versions/A/OpenDirectory
> 0x937a3000 - 0x937a3ff7 com.apple.Cocoa 6.6 (???) <EA27B428-5904-B00B-397A-185588698BCC> /System/Library/Frameworks/Cocoa.framework/Versions/A/Cocoa
> 0x937a4000 - 0x937b8fe7 libbsm.0.dylib ??? (???) <14CB053A-7C47-96DA-E415-0906BA1B78C9> /usr/lib/libbsm.0.dylib
> 0x937b9000 - 0x93872fe7 libsqlite3.dylib 9.6.0 (compatibility 9.0.0) <52438E77-55D1-C231-1936-76F1369518E4> /usr/lib/libsqlite3.dylib
> 0x93873000 - 0x9387dff7 com.apple.HelpData 2.0.5 (34.1.1) <A9CF754F-B254-5D40-B8B5-F35414DFD875> /System/Library/PrivateFrameworks/HelpData.framework/Versions/A/HelpData
> 0x9387e000 - 0x9387eff7 com.apple.quartzframework 1.5 (1.5) <CEB78F00-C5B2-3B3F-BF70-DD6D578719C0> /System/Library/Frameworks/Quartz.framework/Versions/A/Quartz
> 0x9387f000 - 0x9388bff7 libkxld.dylib ??? (???) <9A441C48-2D18-E716-5F38-CBEAE6A0BB3E> /usr/lib/system/libkxld.dylib
> 0x938c6000 - 0x938e6fe7 libresolv.9.dylib 41.0.0 (compatibility 1.0.0) <751955F3-21FB-A03A-4E92-1F3D4EFB8C5B> /usr/lib/libresolv.9.dylib
> 0x938e7000 - 0x9392bfe7 com.apple.Metadata 10.6.3 (507.15) <460BEF23-B89F-6F4C-4940-45556C0671B5> /System/Library/Frameworks/CoreServices.framework/Versions/A/Frameworks/Metadata.framework/Versions/A/Metadata
> 0x93939000 - 0x9393bff7 libRadiance.dylib ??? (???) <47E300B5-DBEF-86C4-29BD-86DBEDD2FBB5> /System/Library/Frameworks/ApplicationServices.framework/Versions/A/Frameworks/ImageIO.framework/Versions/A/Resources/libRadiance.dylib
> 0x93b44000 - 0x93fffff7 com.apple.VideoToolbox 0.484.52 (484.52) <F7CF9485-A932-1305-9AA6-3F7AC38B8B15> /System/Library/PrivateFrameworks/VideoToolbox.framework/Versions/A/VideoToolbox
> 0x94008000 - 0x94117fe7 com.apple.WebKit 6533.21 (6533.21.1) <87AFEE12-270F-2D84-1B93-81DF1DA47A7F> /System/Library/Frameworks/WebKit.framework/Versions/A/WebKit
> 0x94118000 - 0x9411bfe7 libmathCommon.A.dylib 315.0.0 (compatibility 1.0.0) <1622A54F-1A98-2CBE-B6A4-2122981A500E> /usr/lib/system/libmathCommon.A.dylib
> 0x9411c000 - 0x9411efe7 com.apple.ExceptionHandling 1.5 (10) <21F37A49-E63B-121E-D406-1BBC94BEC762> /System/Library/Frameworks/ExceptionHandling.framework/Versions/A/ExceptionHandling
> 0x9411f000 - 0x94140fe7 com.apple.opencl 12.3.6 (12.3.6) <B4104B80-1CB3-191C-AFD3-697843C6BCFF> /System/Library/Frameworks/OpenCL.framework/Versions/A/OpenCL
> 0x94141000 - 0x94323fff com.apple.imageKit 2.0.3 (1.0) <6E557757-26F7-7941-8AE7-046EC1871F50> /System/Library/Frameworks/Quartz.framework/Versions/A/Frameworks/ImageKit.framework/Versions/A/ImageKit
> 0x94324000 - 0x94392ff7 com.apple.QuickLookUIFramework 2.3 (327.6) <74706A08-5399-24FE-00B2-4A702A6B83C1> /System/Library/Frameworks/Quartz.framework/Versions/A/Frameworks/QuickLookUI.framework/Versions/A/QuickLookUI
> 0x943b2000 - 0x9440cfe7 com.apple.CorePDF 1.4 (1.4) <78A1DDE1-1609-223C-A532-D282DC5E0CD0> /System/Library/PrivateFrameworks/CorePDF.framework/Versions/A/CorePDF
> 0x9440d000 - 0x9441eff7 com.apple.LangAnalysis 1.6.6 (1.6.6) <97511CC7-FE23-5AC3-2EE2-B5479FAEB316> /System/Library/Frameworks/ApplicationServices.framework/Versions/A/Frameworks/LangAnalysis.framework/Versions/A/LangAnalysis
> 0x94441000 - 0x9444bffb com.apple.speech.recognition.framework 3.11.1 (3.11.1) <EC0E69C8-A121-70E8-43CF-E6FC4C7779EC> /System/Library/Frameworks/Carbon.framework/Versions/A/Frameworks/SpeechRecognition.framework/Versions/A/SpeechRecognition
> 0x9444e000 - 0x94454fe7 com.apple.CommerceCore 1.0 (9.1) <521D067B-3BDA-D04E-E1FA-CFA526C87EB5> /System/Library/PrivateFrameworks/CommerceKit.framework/Versions/A/Frameworks/CommerceCore.framework/Versions/A/CommerceCore
> 0x944a3000 - 0x9453bfe7 edu.mit.Kerberos 6.5.11 (6.5.11) <F36DB665-A88B-7F5B-6244-6A2E7FFFF668> /System/Library/Frameworks/Kerberos.framework/Versions/A/Kerberos
> 0x9453c000 - 0x94599ff7 com.apple.framework.IOKit 2.0 (???) <3DABAB9C-4949-F441-B077-0498F8E47A35> /System/Library/Frameworks/IOKit.framework/Versions/A/IOKit
> 0x9459a000 - 0x9469cfe7 libcrypto.0.9.8.dylib 0.9.8 (compatibility 0.9.8) <015563C4-81E2-8C8A-82AC-31B38D904A42> /usr/lib/libcrypto.0.9.8.dylib
> 0x9469d000 - 0x946abfe7 libz.1.dylib 1.2.3 (compatibility 1.0.0) <3CE8AA79-F077-F1B0-A039-9103A4A02E92> /usr/lib/libz.1.dylib
> 0x946ac000 - 0x9471bff7 libvMisc.dylib 268.0.1 (compatibility 1.0.0) <2FC2178F-FEF9-6E3F-3289-A6307B1A154C> /System/Library/Frameworks/Accelerate.framework/Versions/A/Frameworks/vecLib.framework/Versions/A/libvMisc.dylib
> 0x9471c000 - 0x9475aff7 com.apple.QuickLookFramework 2.3 (327.6) <66955C29-0C99-D02C-DB18-4952AFB4E886> /System/Library/Frameworks/QuickLook.framework/Versions/A/QuickLook
> 0x9475b000 - 0x94a7ffef com.apple.HIToolbox 1.6.5 (???) <21164164-41CE-61DE-C567-32E89755CB34> /System/Library/Frameworks/Carbon.framework/Versions/A/Frameworks/HIToolbox.framework/Versions/A/HIToolbox
> 0x94a90000 - 0x94bbdffb com.apple.MediaToolbox 0.484.52 (484.52) <C9035045-D1B4-1B1F-7354-B00D1094D804> /System/Library/PrivateFrameworks/MediaToolbox.framework/Versions/A/MediaToolbox
> 0x94bc4000 - 0x94c28ffb com.apple.htmlrendering 72 (1.1.4) <4D451A35-FAB6-1288-71F6-F24A4B6E2371> /System/Library/Frameworks/Carbon.framework/Versions/A/Frameworks/HTMLRendering.framework/Versions/A/HTMLRendering
> 0x94c9e000 - 0x950b4ff7 libBLAS.dylib 219.0.0 (compatibility 1.0.0) <C4FB303A-DB4D-F9E8-181C-129585E59603> /System/Library/Frameworks/Accelerate.framework/Versions/A/Frameworks/vecLib.framework/Versions/A/libBLAS.dylib
> 0x951be000 - 0x95203ff7 com.apple.ImageCaptureCore 1.1 (1.1) <F54F284F-0B81-0AFA-CE47-FF797A6E05B0> /System/Library/Frameworks/ImageCaptureCore.framework/Versions/A/ImageCaptureCore
> 0x953e1000 - 0x953ecff7 libCSync.A.dylib 545.0.0 (compatibility 64.0.0) <287DECA3-7821-32B6-724D-AE03A9A350F9> /System/Library/Frameworks/ApplicationServices.framework/Versions/A/Frameworks/CoreGraphics.framework/Versions/A/Resources/libCSync.A.dylib
> 0x953ed000 - 0x95402fff com.apple.ImageCapture 6.1 (6.1) <B909459A-EAC9-A7C8-F2A9-CD757CDB59E8> /System/Library/Frameworks/Carbon.framework/Versions/A/Frameworks/ImageCapture.framework/Versions/A/ImageCapture
> 0x95403000 - 0x95446ff7 libGLU.dylib ??? (???) <FB26DD53-03F4-A7D7-8804-EBC5B3B37FA3> /System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libGLU.dylib
> 0x95447000 - 0x9547aff7 com.apple.AE 496.5 (496.5) <BF9673D5-2419-7120-26A3-83D264C75222> /System/Library/Frameworks/CoreServices.framework/Versions/A/Frameworks/AE.framework/Versions/A/AE
> 0x95525000 - 0x9556bff7 libauto.dylib ??? (???) <29422A70-87CF-10E2-CE59-FEE1234CFAAE> /usr/lib/libauto.dylib
> 0x956af000 - 0x956b6ff3 com.apple.print.framework.Print 6.1 (237.1) <F5AAE53D-5530-9004-A9E3-2C1690C5328E> /System/Library/Frameworks/Carbon.framework/Versions/A/Frameworks/Print.framework/Versions/A/Print
> 0x956d5000 - 0x956d6ff7 com.apple.TrustEvaluationAgent 1.1 (1) <FEB55E8C-38A4-CFE9-A737-945F39761B4C> /System/Library/PrivateFrameworks/TrustEvaluationAgent.framework/Versions/A/TrustEvaluationAgent
> 0x95776000 - 0x95776ff7 com.apple.ApplicationServices 38 (38) <8012B504-3D83-BFBB-DA65-065E061CFE03> /System/Library/Frameworks/ApplicationServices.framework/Versions/A/ApplicationServices
> 0x95777000 - 0x95857fe7 com.apple.vImage 4.1 (4.1) <D029C515-08E1-93A6-3705-DD062A3A672C> /System/Library/Frameworks/Accelerate.framework/Versions/A/Frameworks/vImage.framework/Versions/A/vImage
> 0x95858000 - 0x95880ff7 libxslt.1.dylib 3.24.0 (compatibility 3.0.0) <315D97C2-4E1F-A95F-A759-4A3FA5639E75> /usr/lib/libxslt.1.dylib
> 0x95881000 - 0x958a5ff7 libJPEG.dylib ??? (???) <0C406884-DAAF-0409-2659-9D1602D752D9> /System/Library/Frameworks/ApplicationServices.framework/Versions/A/Frameworks/ImageIO.framework/Versions/A/Resources/libJPEG.dylib
> 0x958a6000 - 0x95926feb com.apple.SearchKit 1.3.0 (1.3.0) <9E18AEA5-F4B4-8BE5-EEA9-818FC4F46FD9> /System/Library/Frameworks/CoreServices.framework/Versions/A/Frameworks/SearchKit.framework/Versions/A/SearchKit
> 0x95979000 - 0x959a0ff7 com.apple.quartzfilters 1.6.0 (1.6.0) <879A3B93-87A6-88FE-305D-DF1EAED04756> /System/Library/Frameworks/Quartz.framework/Versions/A/Frameworks/QuartzFilters.framework/Versions/A/QuartzFilters
> 0x959a1000 - 0x96284ff7 com.apple.AppKit 6.6.8 (1038.36) <A353465E-CFC9-CB75-949D-786F6F7732F6> /System/Library/Frameworks/AppKit.framework/Versions/C/AppKit
> 0x96298000 - 0x962f9fe7 com.apple.CoreText 151.10 (???) <5C2DEFBE-D54B-4DC7-D456-9ED02880BE98> /System/Library/Frameworks/ApplicationServices.framework/Versions/A/Frameworks/CoreText.framework/Versions/A/CoreText
> 0x962ff000 - 0x964c1feb com.apple.ImageIO.framework 3.0.4 (3.0.4) <20E90968-E04B-7B68-DBA2-92C729A8243F> /System/Library/Frameworks/ApplicationServices.framework/Versions/A/Frameworks/ImageIO.framework/Versions/A/ImageIO
> 0x964c2000 - 0x965c4fef com.apple.MeshKitIO 1.1 (49.2) <34322CDD-E67E-318A-F03A-A3DD05201046> /System/Library/PrivateFrameworks/MeshKit.framework/Versions/A/Frameworks/MeshKitIO.framework/Versions/A/MeshKitIO
> 0x965c5000 - 0x96673ff3 com.apple.ink.framework 1.3.3 (107) <57B54F6F-CE35-D546-C7EC-DBC5FDC79938> /System/Library/Frameworks/Carbon.framework/Versions/A/Frameworks/Ink.framework/Versions/A/Ink
> 0x96746000 - 0x97199ff7 com.apple.WebCore 6533.21 (6533.21.1) <04C66A67-4CF2-5F4B-4EA3-00E67B0F9411> /System/Library/Frameworks/WebKit.framework/Versions/A/Frameworks/WebCore.framework/Versions/A/WebCore
> 0x972e8000 - 0x973dcff7 libiconv.2.dylib 7.0.0 (compatibility 7.0.0) <9EC28185-D26F-533F-90C4-FBAA13A15947> /usr/lib/libiconv.2.dylib
> 0x973dd000 - 0x97495feb libFontParser.dylib ??? (???) <D57D3834-9395-FD58-092A-49B3708E8C89> /System/Library/Frameworks/ApplicationServices.framework/Versions/A/Frameworks/ATS.framework/Versions/A/Resources/libFontParser.dylib
> 0x974a2000 - 0x9751bff7 com.apple.PDFKit 2.5.1 (2.5.1) <CEF13510-F08D-3177-7504-7F8853906DE6> /System/Library/Frameworks/Quartz.framework/Versions/A/Frameworks/PDFKit.framework/Versions/A/PDFKit
> 0x9751c000 - 0x9753bff7 com.apple.CoreVideo 1.6.2 (45.6) <EB53CAA4-5EE2-C356-A954-5775F7DDD493> /System/Library/Frameworks/CoreVideo.framework/Versions/A/CoreVideo
> 0x9753c000 - 0x97836fef com.apple.QuickTime 7.6.6 (1783) <1EC8DC5E-12E3-1DB8-1F7D-44C6EF193C58> /System/Library/Frameworks/QuickTime.framework/Versions/A/QuickTime
> 0x97a57000 - 0x97b9afef com.apple.QTKit 7.7 (1783) <0C6814E2-98C2-74F4-770F-BA355CA86F0F> /System/Library/Frameworks/QTKit.framework/Versions/A/QTKit
> 0x97b9b000 - 0x97be4fe7 libTIFF.dylib ??? (???) <10F7E21B-EC59-6594-004F-798DA3F37789> /System/Library/Frameworks/ApplicationServices.framework/Versions/A/Frameworks/ImageIO.framework/Versions/A/Resources/libTIFF.dylib
> 0x97bef000 - 0x97c33ff3 com.apple.coreui 2 (114) <29F8F1A4-1C96-6A0F-4CC2-9B85CF83209F> /System/Library/PrivateFrameworks/CoreUI.framework/Versions/A/CoreUI
> 0x97c34000 - 0x97c50fe3 com.apple.openscripting 1.3.1 (???) <DA16DE48-59F4-C94B-EBE3-7FAF772211A2> /System/Library/Frameworks/Carbon.framework/Versions/A/Frameworks/OpenScripting.framework/Versions/A/OpenScripting
> 0x97cf2000 - 0x97d1cff7 com.apple.shortcut 1.1 (1.1) <B0514FA9-7CAE-AD94-93CA-7B2A2C5F7B8A> /System/Library/PrivateFrameworks/Shortcut.framework/Versions/A/Shortcut
> 0x97d1d000 - 0x97d4dff7 com.apple.MeshKit 1.1 (49.2) <ECFBD794-5D36-4405-6184-5568BFF29BF3> /System/Library/PrivateFrameworks/MeshKit.framework/Versions/A/MeshKit
> 0x97d4e000 - 0x97d9bfeb com.apple.DirectoryService.PasswordServerFramework 6.1 (6.1) <136BFA48-D456-B677-3B5D-40A6946C3A09> /System/Library/PrivateFrameworks/PasswordServer.framework/Versions/A/PasswordServer
> 0x97d9c000 - 0x97da0ff7 libGIF.dylib ??? (???) <B7BA65AF-681C-F18B-A434-CBEC76A45646> /System/Library/Frameworks/ApplicationServices.framework/Versions/A/Frameworks/ImageIO.framework/Versions/A/Resources/libGIF.dylib
> 0x98431000 - 0x9844cff7 libPng.dylib ??? (???) <4C105512-6FA8-2AE0-D058-6A8AA00F9DA1> /System/Library/Frameworks/ApplicationServices.framework/Versions/A/Frameworks/ImageIO.framework/Versions/A/Resources/libPng.dylib
> 0x9844d000 - 0x9844eff7 com.apple.audio.units.AudioUnit 1.6.7 (1.6.7) <838E1760-F7D9-3239-B3A8-20E25EFD1379> /System/Library/Frameworks/AudioUnit.framework/Versions/A/AudioUnit
> 0x984e4000 - 0x98561ff7 com.apple.iLifeMediaBrowser 2.5.5 (468.2.2) <459C8983-EAC4-7067-3355-5299D111D339> /System/Library/PrivateFrameworks/iLifeMediaBrowser.framework/Versions/A/iLifeMediaBrowser
> 0x98562000 - 0x98574ff7 com.apple.MultitouchSupport.framework 207.11 (207.11) <6FF4F2D6-B8CD-AE13-56CB-17437EE5B741> /System/Library/PrivateFrameworks/MultitouchSupport.framework/Versions/A/MultitouchSupport
> 0x98575000 - 0x985b8ff7 com.apple.NavigationServices 3.5.4 (182) <753B8906-06C0-3AE0-3D6A-8FF5AC18ED12> /System/Library/Frameworks/Carbon.framework/Versions/A/Frameworks/NavigationServices.framework/Versions/A/NavigationServices
> 0x985b9000 - 0x985c1ff7 com.apple.DisplayServicesFW 2.3.3 (289) <828084B0-9197-14DD-F66A-D634250A212E> /System/Library/PrivateFrameworks/DisplayServices.framework/Versions/A/DisplayServices
> 0x985c2000 - 0x985d0ff7 com.apple.opengl 1.6.13 (1.6.13) <025A905D-C1A3-B24A-1585-37C328D77148> /System/Library/Frameworks/OpenGL.framework/Versions/A/OpenGL
> 0x985d1000 - 0x9869cfef com.apple.CoreServices.OSServices 359 (359) <EC340F74-8192-C9DD-40B3-AE4E519A38D7> /System/Library/Frameworks/CoreServices.framework/Versions/A/Frameworks/OSServices.framework/Versions/A/OSServices
> 0x986c8000 - 0x986e0ff7 com.apple.CFOpenDirectory 10.6 (10.6) <F9AFC571-3539-6B46-ABF9-46DA2B608819> /System/Library/Frameworks/OpenDirectory.framework/Versions/A/Frameworks/CFOpenDirectory.framework/Versions/A/CFOpenDirectory
> 0x986e1000 - 0x98722ff7 libRIP.A.dylib 545.0.0 (compatibility 64.0.0) <80998F66-0AD7-AD12-B9AF-3E8D2CE6DE05> /System/Library/Frameworks/ApplicationServices.framework/Versions/A/Frameworks/CoreGraphics.framework/Versions/A/Resources/libRIP.A.dylib
> 0x98723000 - 0x98b74fef com.apple.RawCamera.bundle 3.7.1 (570) <AF94D180-5E0F-10DF-0CB2-FD8EDB110FA2> /System/Library/CoreServices/RawCamera.bundle/Contents/MacOS/RawCamera
> 0x98b75000 - 0x98b75ff7 com.apple.Accelerate 1.6 (Accelerate 1.6) <BC501C9F-7C20-961A-B135-0A457667D03C> /System/Library/Frameworks/Accelerate.framework/Versions/A/Accelerate
> 0x98b76000 - 0x98bb1feb libFontRegistry.dylib ??? (???) <AD45365E-A3EA-62B8-A288-1E13DBA22B1B> /System/Library/Frameworks/ApplicationServices.framework/Versions/A/Frameworks/ATS.framework/Versions/A/Resources/libFontRegistry.dylib
> 0x98bb2000 - 0x98bd4fef com.apple.DirectoryService.Framework 3.6 (621.11) <CA979EAC-9537-43B6-CD69-C144ACB75E09> /System/Library/Frameworks/DirectoryService.framework/Versions/A/DirectoryService
> 0x98bd5000 - 0x98d12fe7 com.apple.audio.toolbox.AudioToolbox 1.6.7 (1.6.7) <2D31CC6F-32CC-72FF-34EC-AB40CEE496A7> /System/Library/Frameworks/AudioToolbox.framework/Versions/A/AudioToolbox
> 0x98d23000 - 0x98d26ffb com.apple.help 1.3.2 (41.1) <8AC20B01-4A3B-94BA-D8AF-E39034B97D8C> /System/Library/Frameworks/Carbon.framework/Versions/A/Frameworks/Help.framework/Versions/A/Help
> 0x98d27000 - 0x98d61ff7 libcups.2.dylib 2.8.0 (compatibility 2.0.0) <038731B1-CC44-3943-E3DE-4BAAA203EB72> /usr/lib/libcups.2.dylib
> 0x98d63000 - 0x98d64ff7 com.apple.MonitorPanelFramework 1.3.0 (1.3.0) <0EC4EEFF-477E-908E-6F21-ED2C973846A4> /System/Library/PrivateFrameworks/MonitorPanel.framework/Versions/A/MonitorPanel
> 0x98d65000 - 0x98f63ff3 com.apple.JavaScriptCore 6533.20 (6533.20.20) <C97A479C-FDF9-3F19-2EE0-80288257C477> /System/Library/Frameworks/JavaScriptCore.framework/Versions/A/JavaScriptCore
> 0x98f64000 - 0x98fbcfe7 com.apple.datadetectorscore 2.0 (80.7) <A40AA74A-9D13-2A6C-5440-B50905923251> /System/Library/PrivateFrameworks/DataDetectorsCore.framework/Versions/A/DataDetectorsCore
> 0x98fbd000 - 0x98fcdff7 libsasl2.2.dylib 3.15.0 (compatibility 3.0.0) <C8744EA3-0AB7-CD03-E639-C4F2B910BE5D> /usr/lib/libsasl2.2.dylib
> 0x99068000 - 0x9906cff7 libGFXShared.dylib ??? (???) <801B2C2C-1692-475A-BAD6-99F85B6E7C25> /System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libGFXShared.dylib
> 0x9906d000 - 0x9906fff7 com.apple.securityhi 4.0 (36638) <38D36D4D-C798-6ACE-5FA8-5C001993AD6B> /System/Library/Frameworks/Carbon.framework/Versions/A/Frameworks/SecurityHI.framework/Versions/A/SecurityHI
> 0x99070000 - 0x9919efe7 com.apple.CoreData 102.1 (251) <E6A457F0-A0A3-32CD-6C69-6286E7C0F063> /System/Library/Frameworks/CoreData.framework/Versions/A/CoreData
> 0x9919f000 - 0x99321fe7 libicucore.A.dylib 40.0.0 (compatibility 1.0.0) <D5980817-6D19-9636-51C3-E82BAE26776B> /usr/lib/libicucore.A.dylib
> 0x99322000 - 0x993defff com.apple.ColorSync 4.6.6 (4.6.6) <7CD8B191-039A-02C3-EA5E-4194EC59995B> /System/Library/Frameworks/ApplicationServices.framework/Versions/A/Frameworks/ColorSync.framework/Versions/A/ColorSync
> 0x993eb000 - 0x993ebff7 com.apple.Accelerate.vecLib 3.6 (vecLib 3.6) <1DEC639C-173D-F808-DE0D-4070CC6F5BC7> /System/Library/Frameworks/Accelerate.framework/Versions/A/Frameworks/vecLib.framework/Versions/A/vecLib
> 0x9943e000 - 0x9954aff7 libGLProgrammability.dylib ??? (???) <04D7E5C3-B0C3-054B-DF49-3B333DCDEE22> /System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libGLProgrammability.dylib
> 0x99553000 - 0x9977eff3 com.apple.QuartzComposer 4.2 ({156.30}) <2C88F8C3-7181-6B1D-B278-E0EE3F33A2AF> /System/Library/Frameworks/Quartz.framework/Versions/A/Frameworks/QuartzComposer.framework/Versions/A/QuartzComposer
> 0x99877000 - 0x9987aff7 libCGXType.A.dylib 545.0.0 (compatibility 64.0.0) <4D766435-EB76-C384-0127-1D20ACD74076> /System/Library/Frameworks/ApplicationServices.framework/Versions/A/Frameworks/CoreGraphics.framework/Versions/A/Resources/libCGXType.A.dylib
> 0x99894000 - 0x998ccfe7 libncurses.5.4.dylib 5.4.0 (compatibility 5.4.0) <8776C654-D54E-9756-A58D-74738A4E9497> /usr/lib/libncurses.5.4.dylib
> 0x998cd000 - 0x998daff7 com.apple.NetFS 3.2.2 (3.2.2) <DDC9C397-C35F-8D7A-BB24-3D1B42FA5FAB> /System/Library/Frameworks/NetFS.framework/Versions/A/NetFS
> 0x998db000 - 0x99978fe3 com.apple.LaunchServices 362.3 (362.3) <15B47388-16C8-97DA-EEBB-1709E136169E> /System/Library/Frameworks/CoreServices.framework/Versions/A/Frameworks/LaunchServices.framework/Versions/A/LaunchServices
> 0x99979000 - 0x99979ff7 com.apple.vecLib 3.6 (vecLib 3.6) <7362077A-890F-3AEF-A8AB-22247B10E106> /System/Library/Frameworks/vecLib.framework/Versions/A/vecLib
> 0x9997a000 - 0x999bcff7 libvDSP.dylib 268.0.1 (compatibility 1.0.0) <3F0ED200-741B-4E27-B89F-634B131F5E9E> /System/Library/Frameworks/Accelerate.framework/Versions/A/Frameworks/vecLib.framework/Versions/A/libvDSP.dylib
> 0x999e4000 - 0x99a21ff7 com.apple.CoreMedia 0.484.52 (484.52) <62B0C876-A931-372F-8947-7CBA0379F427> /System/Library/PrivateFrameworks/CoreMedia.framework/Versions/A/CoreMedia
> 0x99a22000 - 0x99acffe7 libobjc.A.dylib 227.0.0 (compatibility 1.0.0) <9F8413A6-736D-37D9-8EB3-7986D4699957> /usr/lib/libobjc.A.dylib
> 0x99ad3000 - 0x99b09fff libtidy.A.dylib ??? (???) <0FD72C68-4803-4C5B-3A63-05D7394BFD71> /usr/lib/libtidy.A.dylib
> 0x99b59000 - 0x99bc3fe7 libstdc++.6.dylib 7.9.0 (compatibility 7.0.0) <411D87F4-B7E1-44EB-F201-F8B4F9227213> /usr/lib/libstdc++.6.dylib
> 0x99cc1000 - 0x99d53fe7 com.apple.print.framework.PrintCore 6.3 (312.7) <7410D1B2-655D-68DA-D4B9-2C65747B6817> /System/Library/Frameworks/ApplicationServices.framework/Versions/A/Frameworks/PrintCore.framework/Versions/A/PrintCore
> 0xbb100000 - 0xbb103fe7 libLatinSuppConverter.dylib 49.0.0 (compatibility 1.0.0) <80CA35C5-AFBF-DD2D-B47B-9CE773B9CAEF> /System/Library/CoreServices/Encodings/libLatinSuppConverter.dylib
> 0xffff0000 - 0xffff1fff libSystem.B.dylib ??? (???) <2DCD13E3-1BD1-6F25-119A-3863A3848B90> /usr/lib/libSystem.B.dylib
>
> Model: iMac8,1, BootROM IM81.00C1.B00, 2 processors, Intel Core 2 Duo, 3.06 GHz, 2 GB, SMC 1.30f1
> Graphics: NVIDIA GeForce 8800 GS, NVIDIA GeForce 8800 GS, PCIe, 512 MB
> Memory Module: global_name
> AirPort: spairport_wireless_card_type_airport_extreme (0x14E4, 0x8C), Broadcom BCM43xx 1.0 (5.10.131.42.4)
> Bluetooth: Version 2.4.5f3, 2 service, 19 devices, 1 incoming serial ports
> Network Service: Ethernet, Ethernet, en0
> Serial ATA Device: WDC WD5000AAKS-40YGA1, 465.76 GB
> Parallel ATA Device: MATSHITADVD-R UJ-875
> USB Device: Built-in iSight, 0x05ac (Apple Inc.), 0x8502, 0xfd400000 / 2
> USB Device: Keyboard Hub, 0x05ac (Apple Inc.), 0x1006, 0xfa200000 / 2
> USB Device: Apple Keyboard, 0x05ac (Apple Inc.), 0x0221, 0xfa220000 / 3
> USB Device: BRCM2046 Hub, 0x0a5c (Broadcom Corp.), 0x4500, 0x1a100000 / 2
> USB Device: Bluetooth USB Host Controller, 0x05ac (Apple Inc.), 0x820f, 0x1a110000 / 3
> USB Device: IR Receiver, 0x05ac (Apple Inc.), 0x8242, 0x5d100000 / 2
> FireWire Device: Rugged FW/USB, LaCie, Up to 800 Mb/sec
>
>
> On 26 Jun 2011, at 21:59, Ben Bolker wrote:
>
> On 11-06-27 11:57 AM, Christopher Philipson wrote:
>>>> Dear mixed modelers,
>>>>
>>>> I am running r 2.13 and have installed lme4a. When I try my nlmer model (that works in lme4) r crashes.
>>>>
>>>> I am running mac osx 10.6.7
>>>>
>>>> Any ideas?
>>>>
>
> More details (especially including a reproducible example) would be
> very helpful ... see e.g. https://gist.github.com/270442
>
> ... Ben Bolker
>>
_______________________________________________
R-sig-mixed-models at r-project.org mailing list
https://stat.ethz.ch/mailman/listinfo/r-sig-mixed-models
> Dr. Christopher Philipson
> Institute of Evolutionary Biology and Environmental Studies,
> Winterthuerstrasse 190,
> CH-8057,
> Zurich
> Tel: 00 41 44 635 61 29
> Fax: 00 41 44 635 57 11
> christopher.philipson at ieu.uzh.ch
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