[R-sig-ME] lmList error in lme4a
David A Springate
david.springate at postgrad.manchester.ac.uk
Thu Jun 9 16:39:31 CEST 2011
On Thu, 2011-06-09 at 09:24 -0500, Douglas Bates wrote:
> On Thu, Jun 9, 2011 at 8:37 AM, David A Springate
> <david.springate at postgrad.manchester.ac.uk> wrote:
> > Thanks, Ben
> >
> > I re-installed lme4a from scratch and it works fine now!
> >
> > BTW if I do require(lme4a), I still see lme4 "loaded via a namespace" in
> > sessionInfo(), even if I start with R --vanilla
>
> Must be coming from another package as lme4a does not load lme4.
It does seem to on my machine... Is this likely to be a problem?
$ R --vanilla
R version 2.13.0 (2011-04-13)
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ISBN 3-900051-07-0
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> sessionInfo()
R version 2.13.0 (2011-04-13)
Platform: i686-pc-linux-gnu (32-bit)
locale:
[1] LC_CTYPE=en_GB.UTF-8 LC_NUMERIC=C
[3] LC_TIME=en_GB.UTF-8 LC_COLLATE=en_GB.UTF-8
[5] LC_MONETARY=C LC_MESSAGES=en_GB.UTF-8
[7] LC_PAPER=en_GB.UTF-8 LC_NAME=C
[9] LC_ADDRESS=C LC_TELEPHONE=C
[11] LC_MEASUREMENT=en_GB.UTF-8 LC_IDENTIFICATION=C
attached base packages:
[1] stats graphics grDevices utils datasets methods
base
> library(lme4a)
Loading required package: Matrix
Loading required package: lattice
Attaching package: 'Matrix'
The following object(s) are masked from 'package:base':
det
Loading required package: minqa
Loading required package: Rcpp
Loading required package: MatrixModels
Attaching package: 'lme4a'
The following object(s) are masked from 'package:stats':
AIC, BIC
> sessionInfo()
R version 2.13.0 (2011-04-13)
Platform: i686-pc-linux-gnu (32-bit)
locale:
[1] LC_CTYPE=en_GB.UTF-8 LC_NUMERIC=C
[3] LC_TIME=en_GB.UTF-8 LC_COLLATE=en_GB.UTF-8
[5] LC_MONETARY=C LC_MESSAGES=en_GB.UTF-8
[7] LC_PAPER=en_GB.UTF-8 LC_NAME=C
[9] LC_ADDRESS=C LC_TELEPHONE=C
[11] LC_MEASUREMENT=en_GB.UTF-8 LC_IDENTIFICATION=C
attached base packages:
[1] stats graphics grDevices utils datasets methods
base
other attached packages:
[1] lme4a_0.999375-65 MatrixModels_0.2-1 minqa_1.1.15
Rcpp_0.9.4.2
[5] Matrix_0.999375-50 lattice_0.19-23
loaded via a namespace (and not attached):
[1] codetools_0.2-8 grid_2.13.0 lme4_0.999375-39 nlme_3.1-100
[5] splines_2.13.0 stats4_2.13.0
>
> > On Thu, 2011-06-09 at 09:11 -0400, Ben Bolker wrote:
> >> On 06/09/2011 05:35 AM, David A Springate wrote:
> >> > Dear all,
> >> >
> >> > I am trying to use the lmList function from lme4a, but I get the
> >> > following error even with the example sleepstudy dataset:
> >> >
> >> >> require(lme4a)
> >> >> lmList(Reaction ~ Days | Subject, sleepstudy)
> >> > Call: lmList(formula = Reaction ~ Days | Subject, data = sleepstudy)
> >> > Coefficients:
> >> > Error in sprintf(gettext(fmt, domain = domain), ...) :
> >> > invalid type of argument[1]: 'language'
> >> >
> >> It works for me ... I would try starting from a clean session,
> >> especially making sure that you have *not* tried to load lme4 previously
> >> (I see you have it "loaded via a namespace" below).
> >> (Hmmm, I just tried loading and then detaching lme4 to get the same
> >> "loaded via namespace" effect, and it didn't break for me.)
> >>
> >> Ben Bolker
> >>
> >>
> >>
> >>
> >> > sessionInfo()
> >> R version 2.13.0 (2011-04-13)
> >> Platform: i486-pc-linux-gnu (32-bit)
> >>
> >> locale:
> >> [1] LC_CTYPE=en_US.utf8 LC_NUMERIC=C
> >> [3] LC_TIME=en_US.utf8 LC_COLLATE=en_US.utf8
> >> [5] LC_MONETARY=C LC_MESSAGES=en_US.utf8
> >> [7] LC_PAPER=en_US.utf8 LC_NAME=C
> >> [9] LC_ADDRESS=C LC_TELEPHONE=C
> >> [11] LC_MEASUREMENT=en_US.utf8 LC_IDENTIFICATION=C
> >>
> >> attached base packages:
> >> [1] stats graphics grDevices utils datasets methods base
> >>
> >> other attached packages:
> >> [1] lme4a_0.999375-67 MatrixModels_0.2-1 minqa_1.1.15
> >> Rcpp_0.9.4.1
> >> [5] Matrix_0.999375-50 lattice_0.19-26
> >>
> >> loaded via a namespace (and not attached):
> >> [1] codetools_0.2-8 grid_2.13.0 nlme_3.1-101 splines_2.13.0
> >> [5] tools_2.13.0
> >> >
> >>
> >> > Am I missing something or is this a bug?
> >> >
> >> > Thanks,
> >> >
> >> > David
> >> >
> >> >> sessionInfo()
> >> > R version 2.13.0 (2011-04-13)
> >> > Platform: i686-pc-linux-gnu (32-bit)
> >> >
> >> > locale:
> >> > [1] LC_CTYPE=en_GB.UTF-8 LC_NUMERIC=C
> >> > [3] LC_TIME=en_GB.UTF-8 LC_COLLATE=en_GB.UTF-8
> >> > [5] LC_MONETARY=C LC_MESSAGES=en_GB.UTF-8
> >> > [7] LC_PAPER=en_GB.UTF-8 LC_NAME=C
> >> > [9] LC_ADDRESS=C LC_TELEPHONE=C
> >> > [11] LC_MEASUREMENT=en_GB.UTF-8 LC_IDENTIFICATION=C
> >> >
> >> > attached base packages:
> >> > [1] stats graphics grDevices utils datasets methods
> >> > [7] base
> >> >
> >> > other attached packages:
> >> > [1] lme4a_0.999375-67 MatrixModels_0.2-1 minqa_1.1.15
> >> > [4] Rcpp_0.9.4.2 Matrix_0.999375-50 lattice_0.19-23
> >> >
> >> > loaded via a namespace (and not attached):
> >> > [1] codetools_0.2-8 grid_2.13.0 lme4_0.999375-39
> >> > [4] nlme_3.1-100 splines_2.13.0 stats4_2.13.0
> >> > [7] tcltk_2.13.0 tools_2.13.0
> >> >
> >> >> str(sleepstudy)
> >> > 'data.frame': 180 obs. of 3 variables:
> >> > $ Reaction: num 250 259 251 321 357 ...
> >> > $ Days : num 0 1 2 3 4 5 6 7 8 9 ...
> >> > $ Subject : Factor w/ 18 levels "308","309","310",..: 1 1 1 1 1 1 ..
> >> >
> >> > _______________________________________________
> >> > R-sig-mixed-models at r-project.org mailing list
> >> > https://stat.ethz.ch/mailman/listinfo/r-sig-mixed-models
> >>
> >> _______________________________________________
> >> R-sig-mixed-models at r-project.org mailing list
> >> https://stat.ethz.ch/mailman/listinfo/r-sig-mixed-models
> >
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> >
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