[R-sig-ME] Hamiltonian Monte Carlo and Reimann manifold Langevin Monte Carlo and Mixed Effects

dave fournier davef at otter-rsch.com
Mon May 16 05:10:03 CEST 2011

On 11-05-15 07:43 PM, Dominick Samperi wrote:

Yes well that is more difficult. Now that we are open source you are 
dealing with a committee.
I do the ADMB side. Ben and others do the R side (I guess). I have been 
trying to get the R
side people to make the R scripts more flexible so that command line 
options can be passed to
the ADMB part. You can request this either here or perhaps better so as 
not to clutter up the
R list with unwelcome ADMB stuff on the ADMB list.

> On Sat, May 14, 2011 at 1:12 PM, dave fournier<davef at otter-rsch.com>  wrote:
>> I implemented hybrid mcmc (Hamiltonian) in AD Model Builder's random effects
>> module.
>> So far as I know it has not been used much.  It should be possible to access
>> it for testing from
>> Ben Bolker's glmmadmb package for R without too much trouble.
> Thanks Dave,
> I just installed glmmADMB from R-Forge (Version 0.5-2) but found
> no information about Hybrid or Hamiltonian MCMC there.
> Dominick

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