[R-sig-ME] dotplot question

[Douglas Bates]

2011/3/27 Sebastián Daza <sebastian.daza at gmail.com>:
> I got it. I have to detach gdata, gplot, gtools and gmodels.
> Thank you very much!

I'm glad that it has been solved.

> On 3/27/2011 11:59 AM, Sebastián Daza wrote:
>>
>> This is what I get:
>>
>> R version 2.12.2 (2011-02-25)
>> Platform: x86_64-pc-mingw32/x64 (64-bit)
>>
>> locale:
>> [1] LC_COLLATE=English_United States.1252
>> [2] LC_CTYPE=English_United States.1252
>> [3] LC_MONETARY=English_United States.1252
>> [4] LC_NUMERIC=C
>> [5] LC_TIME=English_United States.1252
>>
>> attached base packages:
>> [1] grid splines stats graphics grDevices utils datasets
>> [8] methods base
>>
>> other attached packages:
>> [1] gregmisc_2.1.1 gplots_2.8.0 caTools_1.11 bitops_1.0-4.1
>> [5] gtools_2.6.2 gmodels_2.15.1 gdata_2.8.1 foreign_0.8-42
>> [9] Hmisc_3.8-3 survival_2.36-5 lme4_0.999375-39 Matrix_0.999375-48
>> [13] lattice_0.19-17 rj_0.5.2-1
>>
>> loaded via a namespace (and not attached):
>> [1] cluster_1.13.3 MASS_7.3-11 nlme_3.1-98 rJava_0.8-8 stats4_2.12.2
>> [6] tools_2.12.2
>>
>> Thank you!
>>
>> On 3/27/2011 11:39 AM, Douglas Bates wrote:
>>>
>>> 2011/3/26 Sebastián Daza<sebastian.daza at gmail.com>:
>>>>
>>>> Dear Douglas,
>>>> I ran again the Dyestuff example, and I got a messy dotplot (see
>>>> attachment).
>>>>
>>>> fm1<- lmer( Yield ~ 1 + (1| Batch ), Dyestuff )
>>>> dotplot(ranef(fm1, postVar = TRUE), strip =FALSE,
>>>> scales=list(y=list(col="white")))
>>>>
>>>>> ranef(fm1)
>>>>
>>>> $Batch
>>>> (Intercept)
>>>> A -17.6080025
>>>> B 0.3912889
>>>> C 28.5640930
>>>> D -23.0860478
>>>> E 56.7368971
>>>> F -44.9982287
>>>
>>> Could you send us the output of
>>>
>>> sessionInfo()
>>>
>>> from your R session?
>>>
>>>> Thank you.
>>>> Sebastian.
>>>>
>>>> On 3/21/2011 11:49 AM, Douglas Bates wrote:
>>>>>
>>>>> 2011/3/14 Sebastián Daza<sebastian.daza at gmail.com>:
>>>>>>
>>>>>> Dear list,
>>>>>
>>>>>> I have a couple of questions related to dotplots and ranef:
>>>>>
>>>>>> 1) Does anyone know how to order the distribution of a residuals in a
>>>>>> dotplot:
>>>>>
>>>>>> dotplot(dotplot(ranef(model, postVar = TRUE)...
>>>>>
>>>>>> sometimes residuals are ordered but other times they are not.
>>>>>
>>>>> Can you provide a reproducible example?
>>>>>
>>>>>> 2) Is it possible to organize these plots in a matrix (as par function
>>>>>> does)? I have more than a random term... so would be useful to order
>>>>>> theses
>>>>>> plots in a matrix...
>>>>>
>>>>> We have good news and bad news. The good news is that you get more
>>>>> flexibility with lattice graphics than with traditional R graphics
>>>>> (which is what the par function controls). The bad news is that it
>>>>> requires a bit more effort to control the lattice graphics display in
>>>>> that you need to read the manual page for print.trellis carefully. An
>>>>> example of the dotplot for more than one grouping factor is provided
>>>>> on slide 31 of
>>>>>
>>>>> http://lme4.R-forge.R-project.org/slides/2011-03-16-Amsterdam/1Simple.pdf
>>>>>
>>>>> The code that generates that figure is
>>>>>
>>>>> qrr2<- dotplot(ranef(fm2, postVar = TRUE), strip = FALSE)
>>>>> print(qrr2[[1]], pos = c(0,0,1,0.75), more = TRUE)
>>>>> print(qrr2[[2]], pos = c(0,0.65,1,1))
>>>>>
>>>>>> 3) Is it possible to change the strip name of these plots?
>>>>>
>>>>> Yes. See the description of the strip.default function in the lattice
>>>>> package. In particular, the strip can be suppressed by setting
>>>>> strip=FALSE, as above.
>>>>>
>>>>>> Any clue about these questions will be appreciate.
>>>>>> Thank you in advance!
>>>>>> --
>>>>>> Sebastián Daza
>>>>>> sebastian.daza at gmail.com
>>>>>>
>>>>>> _______________________________________________
>>>>>> R-sig-mixed-models at r-project.org mailing list
>>>>>> https://stat.ethz.ch/mailman/listinfo/r-sig-mixed-models
>>>>>>
>>>>>
>>>>
>>>> --
>>>> Sebastián Daza
>>>> sebastian.daza at gmail.com
>>>>
>>>>
>>>
>>
>
> --
> Sebastián Daza
> sebastian.daza at gmail.com
>