[R-sig-ME] glmmADMB package

[Thomas Merkling]

Thanks for the answers !

I finally achieved to install the package on R 2.7.2 but not on more 
recent versions.
The

install.packages("glmmADMB",repos="http://r-forge.r-project.org")

did not work , it tells that glmmADMB is not available.

I dowloaded the .zip file and installed it from R then replacing the two 
files from the both.zip (as indicated on :
http://otter-rsch.com/admbre/examples/glmmadmb/glmmADMB.html)

But when I try to fit a model I got this message:

glmm.admb(Nb~ClAge*SexChick*EggRank,random=~Nestcol,group="Nest",data=deuxpouss,family="nbinom",link="logit",easyFlag=FALSE,zeroInflation=TRUE) 


'C:/Users/thomas' n'est pas reconnu en tant que commande interne
ou externe, un programme ex‚cutable ou un fichier de commandes.
Erreur dans glmm.admb(Nb ~ ClAge * SexChick * EggRank, random = ~Nestcol, :
The function maximizer failed
De plus : Warning messages:
1: In dir.create(dirname) : '_' existe déjà
2: In glmm.admb(Nb ~ ClAge * SexChick * EggRank, random = ~Nestcol, :
Argument "link" ignored for other familes than "binomial" (exponential 
link used)
3: In file.remove(std_file) :
impossible d'effacer le fichier 'nbmm.std', à cause de 'No such file or 
directory'
4: In shell(paste(.path.package("glmmADMB"), "/admb/", file_name, ".exe", :
'C:/Users/thomas 
merkling/Documents/R/win-library/2.7/glmmADMB/admb/nbmm.exe -maxfn 500 ' 
execution failed with error code 1

I don't understand why ...

I heard about MCMCglmm and I will try it.
Do I need to fit the overdispersed version of the Poisson model with 
another function, lmer for example ?
And what is it for ?

Thanks ...

Le 14/01/2011 17:46, Ben Bolker a écrit :
>    I think it would be better to retrieve the appropriate binary package
> from<https://r-forge.r-project.org/R/?group_id=847>  (or navigate to
> r-forge, to the glmmADMB project, and then to the "R packages" page; it
> will probably install just fine if you download the zip file and
> "install from local packages".
>
>    By the way, how did you try to download the package, and what was the
> result?  Did
>
>   install.packages("glmmADMB",repos="http://r-forge.r-project.org")
>
> not work?
>   If you tried to install from CRAN it wouldn't have worked anyway --
> glmmADMB is hosted on r-forge rather than CRAN because it includes
> binaries (which aren't allowed on CRAN).
>
> On 11-01-14 08:29 AM, Dennis Murphy wrote:
>> Hi:
>>
>> A simple Google search on 'glmmADMB R' returned this as the first hit:
>> http://otter-rsch.com/admbre/examples/glmmadmb/glmmADMB.html
>>
>> Perhaps that will help...
>>
>> Dennis
>>
>> On Fri, Jan 14, 2011 at 4:15 AM, Thomas Merkling<Thomas.Merkling at cict.fr>wrote:
>>
>>> Dear list members,
>>>
>>> I want to fit Zero inflated Poisson mixed models and for that I expected to
>>> use the glmmADMB package which seemed to do that. However I was not able to
>>> download the package. I'm using R 2.11.1. For which R version has the
>>> package been developed ?
>>>
>>> Is there another package authorizing to use to this type of model ?
>>>
>>> Thanks for your help.
>>> Thomas Merkling
>>>
>>> _______________________________________________
>>> R-sig-mixed-models at r-project.org mailing list
>>> https://stat.ethz.ch/mailman/listinfo/r-sig-mixed-models
>>>
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>>
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-- 
Thomas Merkling, Doctorant (PhD Student)

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