[R-sig-ME] Matrix not symmetric
Iker Vaquero Alba
karraspito at yahoo.es
Wed Jan 12 23:29:47 CET 2011
Sorry, the sheet is quite messy even if it was fine when I wrote the post. I attach this time.
Thanks again!
Iker
--- El mié, 12/1/11, Iker Vaquero Alba <karraspito at yahoo.es> escribió:
De: Iker Vaquero Alba <karraspito at yahoo.es>
Asunto: [R-sig-ME] Matrix not symmetric
Para: r-sig-mixed-models at r-project.org
Fecha: miércoles, 12 de enero, 2011 23:20
Hello all:
My name is Iker. I have been looking at several R-help files online because of a
problem I am experiencing when I try to fit one of the statistical
models I need to analyse my data, but actually I have not found any
satisfying solution, so I am writing just in case you can
possibly give me a better solution. The model I try to fit is:
fledgecoltailmodel1<-lmer(nfledge~sex*briventral*inslarge*weatherpc1*tlength-sex:briventral:inslarge:weatherpc1:tlength-sex:briventral:inslarge:weatherpc1-sex:briventral:inslarge:tlength-sex:briventral:weatherpc1:tlength-sex:inslarge:weatherpc1:tlength-briventral:inslarge:weatherpc1:tlength-sex:briventral:inslarge-sex:briventral:weatherpc1-sex:briventral:tlength-sex:inslarge:weatherpc1-sex:inslarge:tlength-sex:weatherpc1:tlength-briventral:inslarge:weatherpc1-briventral:inslarge:tlength-briventral:weatherpc1:tlength-inslarge:weatherpc1:tlength+(site|pair),family=poisson)
Obviously, the exaggerated length is due to the fact that, after
writing the model, I remove all the interactions that are biologically
impossible to interpret for me. "nfledge" is the number of chicks
fledged in several barn swallow nests all over my field sites, so I
interpret it as count data, that's why I use the "poisson" family for
error distribution. when I type "summary(fledgecoltailmodel1)", I get
this error message:
Error in asMethod(object) : matrix is not symmetric [1,2]
I cannot really understand what that means. As an interesting fact (I
think), when I fit exactly the same model but without specifying the
error family (i.e. assuming Gaussian error distribution) everything is
OK and I get no error message. I wonder if I should go on with that, but
my dependant variable is definitely count data.
According to the reply to a post of a girl called Luisa, which was experiencing a similar
problem, I tried updating my "lme4" package, and I didn't load the
"nlme" one together with "lme4", but I am still getting the same error
message.
I would very much appreciate if you could have a look at my problem
and try to help me. Thank you very much in advance for your help.
PS. My data sheet is as follows:
ring
site
pair
sex
instotal
weatherpc1
tlength
briventral
nfledge
X810200
1
1
M
58.15622098
-0.85532384
99.5
59.28555556
6
X260659
1
1
F
58.15622098
-0.85532384
91.25
97.524
6
X810112
1
2
M
58.15622098
-0.85532384
101
87.32977778
3
X294401
1
2
F
58.15622098
-0.85532384
88.5
102.1536667
3
X260663
2
4
M
60.79535975
0.11895195
126.5
86.16255556
4
X260662
2
4
F
60.79535975
0.11895195
77
77.03777778
4
X810144
2
5
M
60.79535975
0.11895195
123.5
90.37422222
4
X810161
2
5
F
60.79535975
0.11895195
94.5
105.935
4
X260655
3
1
M
89.87658651
-0.2868328
116
95.17288889
3
X260656
3
1
F
89.87658651
-0.2868328
93.75
104.6617778
3
X294424
3
2
M
89.87658651
-0.2868328
99.5
96.63188889
4
X294425
3
2
F
89.87658651
-0.2868328
85
108.8036667
4
X260677
4
1
M
43.88126873
0.02386017
96.5
67.05327778
5
X260676
4
1
F
43.88126873
0.02386017
96.5
60.72911111
5
X294476
4
2
M
43.88126873
0.02386017
105.5
52.557
5
X260678
4
2
F
43.88126873
0.02386017
97
71.75055556
5
X294415
5
1
M
38.30297125
-2.18379636
108.5
92.25877778
3
X294460
5
1
F
38.30297125
-2.18379636
99
82.07811111
3
X810163
5
2
M
38.30297125
-2.18379636
96
108.1566667
5
X294475
5
2
F
38.30297125
-2.18379636
92.5
106.5483333
5
V759861
7
1
M
53.74017146
1.04051463
102.5
117.1058889
4
X260650
7
1
F
53.74017146
1.04051463
99.25
116.427
4
X260649
7
2
M
53.74017146
1.04051463
102
144.2272222
5
X260648
7
2
F
53.74017146
1.04051463
82.5
130.3356667
5
X294427
9
2
F
34.43989492
2.15766133
85.25
99.30922222
2
V759729
9
4
M
34.43989492
2.15766133
96
74.12177778
3
X294426
9
4
F
34.43989492
2.15766133
90.75
100.0711111
3
X294452
9
5
M
34.43989492
2.15766133
106
87.08855556
4
X294453
9
5
F
34.43989492
2.15766133
82
118.4021111
4
X810130
9
6
M
34.43989492
2.15766133
98
71.33188889
4
X810131
9
6
F
34.43989492
2.15766133
84.25
125.8916667
4
X260672
10
1
M
66.27811771
-1.40136386
114.5
64.233
5
X260673
10
1
F
66.27811771
-1.40136386
89.75
60.90788889
5
X260645
10
2
M
66.27811771
-1.40136386
108
144.0727778
5
X260644
10
2
F
66.27811771
-1.40136386
85.5
140.534
5
X810127
10
3
M
66.27811771
-1.40136386
107.5
107.075
5
X810128
10
3
F
66.27811771
-1.40136386
89
97.23222222
5
V759797
11
1
M
62.15866788
-1.19592182
102
79.36677778
5
V759720
11
1
F
62.15866788
-1.19592182
NA
93.96922222
5
X810101
11
2
M
62.15866788
-1.19592182
94.5
95.95311111
6
V759727
11
2
F
62.15866788
-1.19592182
95.75
80.95455556
6
X810155
11
3
M
62.15866788
-1.19592182
94.5
88.40144444
4
X810162
11
3
F
62.15866788
-1.19592182
87
112.3604444
4
V759744
12
1
M
56.05228155
-0.4733969
100.25
114.9761111
3
X260643
12
1
F
56.05228155
-0.4733969
79.5
148.9321111
3
X810201
12
2
M
56.05228155
-0.4733969
99
51.80822222
3
X294465
12
2
F
56.05228155
-0.4733969
81.5
89.81911111
3
V759750
12
3
M
56.05228155
-0.4733969
124.5
96.48477778
4
X260666
12
3
F
56.05228155
-0.4733969
92.5
61.49222222
4
Iker Vaquero-Alba
Centre for Ecology
and Conservation
Daphne du Maurier
Building
University of Exeter,
Cornwall Campus
Treliever Road
TR10 9EZ Penryn
U.K.
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