[R-sig-ME] MCMCglmm binomial model
François Dumont
dumont.francois.3 at courrier.uqam.ca
Wed Mar 23 19:43:43 CET 2011
Hi,
I'm trying to run a binomial model with a MCMCglmm code that I found on
the R-sig-ME list (see below). Unfortunately, the following error
message occurs when I send the code to R. What I am doing wrong ?
error message : Erreur dans `[.data.frame`(data, ,
match(response.names[0:nJ + nt], names(data))) :
undefined columns selected
prior <- list(R=list(V=1, nu=0.002), G=list(G1=list(V=1, nu=1,
alpha.mu=0, alpha.V=100),G2=list(V=1, nu=1, alpha.mu=0, alpha.V=100),
G3=list(V=1, nu=1, alpha.mu=0, alpha.V=100)))
model1 = MCMCglmm(bik~
+ageclass
+yday
+nbAdult
,random=~year+Famille+Marmotte
, data=sp,nitt=503000,thin=500,burnin=3000,verbose=FALSE, prior=prior,
pr=TRUE, family="multinomial2", DIC=TRUE)
bik is a binomial variables (an animal exhibited or not a behaviour)
with value being 0 or 1. I need to extract the specific sample of each
individual so that's why pr=TRUE.
Thanks.
François Dumont.
--
Candidat au doctorat en Biologie
Laboratoire de lutte biologique - Dr. Éric Lucas
Université du Québec à Montréal
More information about the R-sig-mixed-models
mailing list