[R-sig-ME] Fwd: failure notice
Felix Bach
felixbach72 at gmx.de
Thu Aug 26 18:17:29 CEST 2010
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Hello,
I am new to this group and hope that my question is not too simple. however, I checked previous messages and could not find an answer to my question.
Iwould like to obtian the credibility interval for the intraclass correlation for a random efffects model. For example
(fm1 <- lmer(Reaction ~ Days + (1|Subject), sleepstudy))
Linear mixed model fit by REML
Formula: Reaction ~ Days + (1 | Subject)
Data: sleepstudy
Random effects:
Groups Name Variance Std.Dev.
Subject (Intercept) 1378.18 37.124
Residual 960.46 30.991
--> ICC= 1378/(1378+960)
set.seed(101); samp0 <- mcmcsamp(fm1, n = 1000)
str(samp0)
Formal class 'merMCMC' [package "lme4"] with 9 slots
..@ Gp : int [1:2] 0 18
..@ ST : num [1, 1:1000] 1.198 1.104 0.941 0.805 0.874 ...
..@ call : language lmer(formula = Reaction ~ Days + (1 | Subject), data = sleepstudy)
..@ deviance: num [1:1000] 1794 1794 1794 1795 1798 ...
..@ dims : Named int [1:18] 1 180 2 18 1 1 0 1 2 5 ...
.. ..- attr(*, "names")= chr [1:18] "nt" "n" "p" "q" ...
..@ fixef : num [1:2, 1:1000] 251.4 10.5 256.8 10.1 263.1 ...
.. ..- attr(*, "dimnames")=List of 2
.. .. ..$ : chr [1:2] "(Intercept)" "Days"
.. .. ..$ : NULL
..@ nc : int 1
..@ ranef : num[1:18, 0 ]
..@ sigma : num [1, 1:1000] 31 30 31.9 30.9 31.1 ...
I can get the residual variance (@sigma) but not the subject variance.
Any suggestions would be highly appreciated. Many thanks
Felix
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