[R-sig-ME] sigmoid residual distribution for a random effect
Romain.Piault
romain.piault at gmail.com
Thu May 20 17:45:53 CEST 2010
Hi everybody!
Using a linear mixed-effects model (library nlme), I have found a
sigmoïd pattern in the distribution of residuals for my random factor,
and I wonder whether some of you know potential causes of this
phenomenon.
The model is as follow:
model<-lme(MeanBand~Body_Condition+Brood_Size,random=~1|Nid)
where * MeanBand is a measure of the width of the sub-terminal black
band on the tail feathers of young kestrels
* Body_Condition is a continuous measure of the amount of
resources nestlings received during their development
* Brood_Size is a factor (with 2 levels) indicating whether the
brood where a nestling was raised was reduced or increased by one
nestling at hatching
* Nid is the nest where a nestling was raised. Because there are 2
or more nestlings in one nest, Nest enters in the model as a random
factor.
Using qqnorm(model,~ranef(.,level=1)), I find that residuals do not
follow a line but describe a sigmoïd, revealing that the distribution of
the residuals for my random factor is not normal.
My question is therefore: do you know potential causes for such
distribution of residuals for a random effect?
Here is the output of the model:
Linear mixed-effects model fit by REML
Data: NULL
AIC BIC logLik
322.0317 332.9037 -156.0159
Random effects:
Formula: ~1 | Nid
(Intercept) Residual
StdDev: 1.523250 2.059382
Fixed effects: MeanBand ~ condition + Brood
Value Std.Error DF t-value p-value
(Intercept) 19.050443 0.6243577 48 30.512066 0.0000
condition 0.093862 0.0263644 48 3.560170 0.0008
BroodRed 1.730359 0.8764315 17 1.974323 0.0648
Correlation:
(Intr) condtn
condition 0.080
BroodRed -0.717 -0.109
Standardized Within-Group Residuals:
Min Q1 Med Q3 Max
-1.81195733 -0.68685432 -0.02572958 0.65085007 1.77797726
Number of Observations: 68
Number of Groups: 19
Furthermore, I wonder whether the high correlation shown in the
"Correlation" argument is indicative of any particular problem.
Thanking you in advance for your answers!
Best regards,
Romain
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