[R-sig-ME] [R-SIG-Mac] lme4 under 64 bit (Snow Leopard)

[David Winsemius]

On Sep 15, 2009, at 12:58 AM, Will Morris wrote:

> When you run the 64bit version of R on OSX you need to compile all  
> packages
> from source as 64bit too, rather than simply downloading the  
> binaries which
> are all 32bit.

That is not my experience, although it was true in the past. Most of  
the CRAN binaries now work fine under 64 bit. I do not have Snow  
Leopard so this experience is only from MacOSX 10.5.8.

-- 
David Winsemius
>
> To compile R packages from source you need to have installed the Xcode
> package from apple. It can be installed from your OSX discs or  
> downloaded
> from the Apple Developer Network site which is is free to join.
>
> On Tue, Sep 15, 2009 at 1:30 PM, Michael Kubovy  
> <kubovy at virginia.edu> wrote:
>
>> Here is my session:
>>
>> R version 2.9.2 Patched (2009-09-05 r49613)
>> Copyright (C) 2009 The R Foundation for Statistical Computing
>> ISBN 3-900051-07-0
>>
>> R is free software and comes with ABSOLUTELY NO WARRANTY.
>> You are welcome to redistribute it under certain conditions.
>> Type 'license()' or 'licence()' for distribution details.
>>
>> Natural language support but running in an English locale
>>
>> R is a collaborative project with many contributors.
>> Type 'contributors()' for more information and
>> 'citation()' on how to cite R or R packages in publications.
>>
>> Type 'demo()' for some demos, 'help()' for on-line help, or
>> 'help.start()' for an HTML browser interface to help.
>> Type 'q()' to quit R.
>>
>> [R.app GUI 1.28 (5399) x86_64-apple-darwin9.8.0]
>>
>> Error in library.dynam(lib, package, package.lib) :
>> shared library 'lme4' not found
>> [Workspace restored from /.RData]
>>
>> trying URL 'http://lib.stat.cmu.edu/R/CRAN/src/contrib/
>> lme4_0.999375-31.tar.gz'
>> Content type 'application/x-gzip' length 839548 bytes (819 Kb)
>> opened URL
>> ==================================================
>> downloaded 819 Kb
>>
>> * Installing *source* package ‘lme4’ ...
>> ** libs
>> ** arch - i386
>> sh: make: command not found
>> ERROR: compilation failed for package ‘lme4’
>> * Removing
>> ‘/Library/Frameworks/R.framework/Versions/2.9/Resources/library/lme4’
>> * Restoring previous
>> ‘/Library/Frameworks/R.framework/Versions/2.9/Resources/library/lme4’
>>
>> The downloaded packages are in
>>
>> ‘/private/var/folders/TG/TG6nWu2pHYCI-BdWWiyMxU+++TI/-Tmp-/ 
>> Rtmprhnu6K/downloaded_packages’
>>> require(lme4)
>> Loading required package: lme4
>> Error: package 'lme4' is not installed for 'arch=x86_64'
>> In addition: Warning message:
>> In install.packages(c("lme4"), lib =
>> "/Library/Frameworks/R.framework/Resources/library/",  :
>> installation of package 'lme4' had non-zero exit status
>>
>> _______________________________________________
>> R-sig-mixed-models at r-project.org mailing list
>> https://stat.ethz.ch/mailman/listinfo/r-sig-mixed-models
>>
>
>
>
> -- 
> Will Morris
> Masters of Philosophy candidate
> Vesk Plant Ecology Lab
> The School of Botany
> The University of Melbourne
> Australia
> Phone: +61 3 8344 0120
> http://www.botany.unimelb.edu.au/vesk/
>
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>
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David Winsemius, MD
Heritage Laboratories
West Hartford, CT