[R-sig-ME] error from using variance function on Theoph data
Michael Li
wuolong at gmail.com
Thu Jul 9 23:08:00 CEST 2009
Hi, I was trying out nlme function. For some reason, it did work for
me when I tried to use the power variance function,
even though this is a well known example (and I copied the code from
one of J Pinheiro's presentations).
What could be wrong? I'm using R 2.9.0.
Thanks
Michael
> library (nlme)
> m1 = nlme (conc ~ SSfol (Dose, Time, lKe, lKa, lCl), Theoph,
+ fixed = lKe + lKa + lCl ~ 1,
+ start = list (fixed = c(-2.5, 0.4, -3)),
+ random = pdDiag (lKa + lCl ~ 1))
> m1
Nonlinear mixed-effects model fit by maximum likelihood
Model: conc ~ SSfol(Dose, Time, lKe, lKa, lCl)
Data: Theoph
Log-likelihood: -177.0215
Fixed: lKe + lKa + lCl ~ 1
lKe lKa lCl
-2.4547019 0.4657267 -3.2272219
Random effects:
Formula: list(lKa ~ 1, lCl ~ 1)
Level: Subject
Structure: Diagonal
lKa lCl Residual
StdDev: 0.6435864 0.1669279 0.7092533
Number of Observations: 132
Number of Groups: 12
> update (m1, weights = varConstPower (power = 0.1))
Error in eigen(val) : infinite or missing values in 'x'
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