[R-sig-ME] Bug in weights in lmer
Nick Isaac
njbisaac at googlemail.com
Wed Apr 23 18:00:32 CEST 2008
Thanks Harold - very curious.
See my results below. This sounds like a versioning issue, in which
case it would be good to get as many folk as possible to replicate it.
cheers, Nick
> w<-rep(1,nrow(sleepstudy))
> (fm1 <- lmer(Reaction ~ Days + (Days|Subject), sleepstudy) )
Linear mixed model fit by REML
Formula: Reaction ~ Days + (Days | Subject)
Data: sleepstudy
AIC BIC logLik deviance REMLdev
1756 1775 -871.8 1752 1744
Random effects:
Groups Name Variance Std.Dev. Corr
Subject (Intercept) 612.095 24.7405
Days 35.071 5.9221 0.065
Residual 654.944 25.5919
Number of obs: 180, groups: Subject, 18
Fixed effects:
Estimate Std. Error t value
(Intercept) 251.405 6.825 36.84
Days 10.467 1.546 6.77
Correlation of Fixed Effects:
(Intr)
Days -0.138
>
> (fm2 <- lmer(Reaction ~ Days + (Days|Subject), sleepstudy, weights =
+ w) )
Linear mixed model fit by REML
Formula: Reaction ~ Days + (Days | Subject)
Data: sleepstudy
AIC BIC logLik deviance REMLdev
1756 1775 -871.8 1752 1744
Random effects:
Groups Name Variance Std.Dev. Corr
Subject (Intercept) 6640265 2576.87
Days 380465 616.82 0.065
Residual 7105115 2665.54
Number of obs: 180, groups: Subject, 18
Fixed effects:
Estimate Std. Error t value
(Intercept) 975.9 710.8 1.373
Days 173.3 161.0 1.076
Correlation of Fixed Effects:
(Intr)
Days -0.138
> (fm3 <- lmer(Reaction ~ Days + (Days|Subject), sleepstudy, weights =
+ w/sum(w)) )
Linear mixed model fit by REML
Formula: Reaction ~ Days + (Days | Subject)
Data: sleepstudy
AIC BIC logLik deviance REMLdev
820.9 840 -404.4 817.3 808.9
Random effects:
Groups Name Variance Std.Dev. Corr
Subject (Intercept) 169988830 13038.0
Days 9739898 3120.9 0.065
Residual 1010497 1005.2
Number of obs: 180, groups: Subject, 18
Fixed effects:
Estimate Std. Error t value
(Intercept) 72.74 3596.47 0.02022
Days 12.92 814.61 0.01586
Correlation of Fixed Effects:
(Intr)
Days -0.138
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