<html xmlns:o="urn:schemas-microsoft-com:office:office" xmlns:w="urn:schemas-microsoft-com:office:word" xmlns:m="http://schemas.microsoft.com/office/2004/12/omml" xmlns="http://www.w3.org/TR/REC-html40"><head><meta http-equiv=Content-Type content="text/html; charset=utf-8"><meta name=Generator content="Microsoft Word 15 (filtered medium)"><style><!--
/* Font Definitions */
@font-face
{font-family:"Cambria Math";
panose-1:2 4 5 3 5 4 6 3 2 4;}
@font-face
{font-family:Calibri;
panose-1:2 15 5 2 2 2 4 3 2 4;}
/* Style Definitions */
p.MsoNormal, li.MsoNormal, div.MsoNormal
{margin:0cm;
font-size:11.0pt;
font-family:"Calibri",sans-serif;}
a:link, span.MsoHyperlink
{mso-style-priority:99;
color:blue;
text-decoration:underline;}
.MsoChpDefault
{mso-style-type:export-only;}
@page WordSection1
{size:612.0pt 792.0pt;
margin:70.85pt 70.85pt 70.85pt 70.85pt;}
div.WordSection1
{page:WordSection1;}
--></style></head><body lang=TR link=blue vlink="#954F72" style='word-wrap:break-word'><div class=WordSection1><p class=MsoNormal>I am sorry, sir…<br><br>I have one more question.<br><br>How can I apply "Knapp-Hartung's statistic for testing the significance" by following the codes mentioned before? I need F, R<sup>2</sup>, and Q<sub>w</sub> results for Avova results.</p><p class=MsoNormal><o:p> </o:p></p><p class=MsoNormal><o:p> </o:p></p><p class=MsoNormal><o:p> </o:p></p><p class=MsoNormal style='background:white'><b><span style='font-size:12.0pt;font-family:"Arial",sans-serif;color:#222222'>---</span></b><span style='font-size:12.0pt;font-family:"Arial",sans-serif;color:#222222'><o:p></o:p></span></p><p class=MsoNormal style='background:white'><b><span style='font-family:"Arial",sans-serif;color:#222222'>İyi çalışmalar dilerim…<o:p></o:p></span></b></p><p class=MsoNormal><b><span style='font-size:12.0pt'>Yours sincerely…</span></b><o:p></o:p></p><p class=MsoNormal><o:p> </o:p></p><div style='mso-element:para-border-div;border:none;border-top:solid #E1E1E1 1.0pt;padding:3.0pt 0cm 0cm 0cm'><p class=MsoNormal style='border:none;padding:0cm'><b>Kimden: </b><a href="mailto:fatihcelik2842@gmail.com">Fatih ÇELİK</a><br><b>Gönderilme: </b>17 Mart 2023 Cuma 22:34<br><b>Kime: </b><a href="mailto:wolfgang.viechtbauer@maastrichtuniversity.nl">Viechtbauer, Wolfgang (NP)</a>; <a href="mailto:r-sig-meta-analysis@r-project.org">R Special Interest Group for Meta-Analysis</a><br><b>Konu: </b>Ynt: predict error in metafor</p></div><p class=MsoNormal><o:p> </o:p></p><p class=MsoNormal>Dear Viechtbauer,<br><br>Firstly, thank you for your interest. <o:p></o:p></p><p class=MsoNormal> <o:p></o:p></p><p class=MsoNormal style='margin-bottom:12.0pt'>I performed the analyses in line with your recommendations and obtained the following output.<br><br><br><o:p></o:p></p><p class=MsoNormal>table(dat$publication)<o:p></o:p></p><p class=MsoNormal> <o:p></o:p></p><p class=MsoNormal>conference paper book section articles Thesis<o:p></o:p></p><p class=MsoNormal> 1 1 58 25 <o:p></o:p></p><p class=MsoNormal> <o:p></o:p></p><p class=MsoNormal>Test of Moderators (coefficients 2:4):<o:p></o:p></p><p class=MsoNormal>QM(df = 3) = 2.4308, p-val = 0.4879<o:p></o:p></p><p class=MsoNormal> <o:p></o:p></p><p class=MsoNormal>Model Results:<o:p></o:p></p><p class=MsoNormal> <o:p></o:p></p><p class=MsoNormal> estimate se zval pval ci.lb ci.ub <o:p></o:p></p><p class=MsoNormal>intrcpt 0.8700 0.0467 18.6136 <.0001 0.7784 0.9616 <o:p></o:p></p><p class=MsoNormal>publicationbook section -0.0100 0.0665 -0.1505 0.8804 -0.1402 0.1202 <o:p></o:p></p><p class=MsoNormal>publicationArticle -0.0487 0.0472 -1.0320 0.3020 -0.1411 0.0438 <o:p></o:p></p><p class=MsoNormal>publicationthesis -0.0571 0.0478 -1.1962 0.2316 -0.1507 0.0365 <o:p></o:p></p><p class=MsoNormal> <o:p></o:p></p><p class=MsoNormal> <o:p></o:p></p><p class=MsoNormal>> predict(res1, newmods=rbind(0,diag(3)), digits=3)<o:p></o:p></p><p class=MsoNormal> <o:p></o:p></p><p class=MsoNormal> pred se ci.lb ci.ub pi.lb pi.ub <o:p></o:p></p><p class=MsoNormal><span style='color:red'>1 0.870 0.047 0.778 0.962 0.741 0.999 </span><o:p></o:p></p><p class=MsoNormal><span style='color:#00B0F0'>2 0.860 0.047 0.767 0.953 0.731 0.989 </span><o:p></o:p></p><p class=MsoNormal><span style='color:#00B050'>3 0.821 0.006 0.809 0.834 0.730 0.912 </span><o:p></o:p></p><p class=MsoNormal><span style='color:black;background:yellow;mso-highlight:yellow'>4 0.813 0.010 0.794 0.832 0.721 0.905</span><o:p></o:p></p><p class=MsoNormal> <o:p></o:p></p><p class=MsoNormal> <o:p></o:p></p><p class=MsoNormal>In this case, should I evaluate the predict results according to the order that appears after the table function? In other words, should I report the red number 1 as "conference paper", the blue number 2 as "book section", the green number 3 as "article", and the yellow number 4 as "thesis"?<o:p></o:p></p><p class=MsoNormal> <o:p></o:p></p><p class=MsoNormal> <o:p></o:p></p><p class=MsoNormal style='background:white'><b><span style='font-size:12.0pt;font-family:"Arial",sans-serif;color:#222222'>---</span></b><o:p></o:p></p><p class=MsoNormal style='background:white'><b><span style='font-family:"Arial",sans-serif;color:#222222'>İyi çalışmalar dilerim…</span></b><o:p></o:p></p><p class=MsoNormal><b><span style='font-size:12.0pt'>Yours sincerely…</span></b><o:p></o:p></p><p class=MsoNormal> <o:p></o:p></p><div style='border:none;border-top:solid #E1E1E1 1.0pt;padding:3.0pt 0cm 0cm 0cm'><p class=MsoNormal><b>Kimden: </b><a href="mailto:wolfgang.viechtbauer@maastrichtuniversity.nl">Viechtbauer, Wolfgang (NP)</a><br><b>Gönderilme: </b>17 Mart 2023 Cuma 18:32<br><b>Kime: </b><a href="mailto:r-sig-meta-analysis@r-project.org">R Special Interest Group for Meta-Analysis</a><br><b>Bilgi: </b><a href="mailto:fatihcelik2842@gmail.com">Fatih ÇELİK</a><br><b>Konu: </b>RE: predict error in metafor<o:p></o:p></p></div><p class=MsoNormal> <o:p></o:p></p><p class=MsoNormal>Dear Fatih,<o:p></o:p></p><p class=MsoNormal> <o:p></o:p></p><p class=MsoNormal>First of all, given that the error message says that the model matrix contains 4 columns, there must be four levels to the 'publications' factor, not three (i.e., aside from article, book sections, and thesis, there must be another level).<o:p></o:p></p><p class=MsoNormal> <o:p></o:p></p><p class=MsoNormal>table(dat$publications)<o:p></o:p></p><p class=MsoNormal> <o:p></o:p></p><p class=MsoNormal>will tell you what the levels are.<o:p></o:p></p><p class=MsoNormal> <o:p></o:p></p><p class=MsoNormal>And if you look at the output from 'res', you will see that the model contains three dummy variables, one for each level except the reference level, corresponding to the model intercept.<o:p></o:p></p><p class=MsoNormal> <o:p></o:p></p><p class=MsoNormal>So, to use predict(), you have to specify the values for the three dummy variables. In particular,<o:p></o:p></p><p class=MsoNormal> <o:p></o:p></p><p class=MsoNormal>predict(res, newmods=c(0,0,0), digits=3)<o:p></o:p></p><p class=MsoNormal>predict(res, newmods=c(1,0,0), digits=3)<o:p></o:p></p><p class=MsoNormal>predict(res, newmods=c(0,1,0), digits=3)<o:p></o:p></p><p class=MsoNormal>predict(res, newmods=c(0,0,1), digits=3)<o:p></o:p></p><p class=MsoNormal> <o:p></o:p></p><p class=MsoNormal>will give you the predicted average effect (or in this case, alpha) for each level (including the reference level). Or more compactly:<o:p></o:p></p><p class=MsoNormal> <o:p></o:p></p><p class=MsoNormal>predict(res, newmods=rbind(0,diag(3)), digits=3)<o:p></o:p></p><p class=MsoNormal> <o:p></o:p></p><p class=MsoNormal>Best,<o:p></o:p></p><p class=MsoNormal>Wolfgang<o:p></o:p></p><p class=MsoNormal> <o:p></o:p></p><p class=MsoNormal>>-----Original Message-----<o:p></o:p></p><p class=MsoNormal>>From: R-sig-meta-analysis [mailto:r-sig-meta-analysis-bounces@r-project.org] On<o:p></o:p></p><p class=MsoNormal>>Behalf Of Fatih ÇELIK via R-sig-meta-analysis<o:p></o:p></p><p class=MsoNormal>>Sent: Friday, 17 March, 2023 15:30<o:p></o:p></p><p class=MsoNormal>>To: r-sig-meta-analysis@r-project.org<o:p></o:p></p><p class=MsoNormal>>Cc: Fatih ÇELİK<o:p></o:p></p><p class=MsoNormal>>Subject: [R-meta] predict error in metafor<o:p></o:p></p><p class=MsoNormal>> <o:p></o:p></p><p class=MsoNormal>>Respected members,<o:p></o:p></p><p class=MsoNormal>> <o:p></o:p></p><p class=MsoNormal>>While doing meta-analysis (reliability generalization) on R metafor, I am having<o:p></o:p></p><p class=MsoNormal>>trouble and I can't get over it.<o:p></o:p></p><p class=MsoNormal>> <o:p></o:p></p><p class=MsoNormal>>I want to do moderator analysis with a categorical variable feature over<o:p></o:p></p><p class=MsoNormal>>"publications" (i.e. article, book sections, and thesis). For this, I use the<o:p></o:p></p><p class=MsoNormal>>following code<o:p></o:p></p><p class=MsoNormal>> <o:p></o:p></p><p class=MsoNormal>>res<- rma(measure="ARAW", ai=ai, mi=mi, ni=ni, mods = ~ publications, data=dat)<o:p></o:p></p><p class=MsoNormal>>res<o:p></o:p></p><p class=MsoNormal>>predict(res, newmods=c(0, 1), digits=3)<o:p></o:p></p><p class=MsoNormal>> <o:p></o:p></p><p class=MsoNormal>>However, when I run predict code (recent code), it gives the following error.<o:p></o:p></p><p class=MsoNormal>> <o:p></o:p></p><p class=MsoNormal>>Error in predict.rma(res4, newmods = c(0, 1), digits = 3) :<o:p></o:p></p><p class=MsoNormal>>Dimensions of 'newmods' (3) do not the match dimensions of the model (4).<o:p></o:p></p><p class=MsoNormal>> <o:p></o:p></p><p class=MsoNormal>>As far as I understand, it gives this error because there are more than two<o:p></o:p></p><p class=MsoNormal>>categories. Because when I analyse a different variable with two categories (like<o:p></o:p></p><p class=MsoNormal>>female and male), it does the “predict” operation without giving an error. Can<o:p></o:p></p><p class=MsoNormal>>you help me, please? How else can I edit and run this code (predict)?<o:p></o:p></p><p class=MsoNormal>> <o:p></o:p></p><p class=MsoNormal>>Sincerely….<o:p></o:p></p><p class=MsoNormal>> <o:p></o:p></p><p class=MsoNormal>>Ph.D. Fatih ÇELİK<o:p></o:p></p><p class=MsoNormal>>Trabzon Üniversitesi/Trabzon University<o:p></o:p></p><p class=MsoNormal>>Vakfıkebir Meslek Yüksekokulu/Vakfikebir Vocational School<o:p></o:p></p><p class=MsoNormal>>Pazarlama ve Reklamcılık Bölümü/Department of Marketing and Advertising<o:p></o:p></p><p class=MsoNormal>> <o:p></o:p></p><p class=MsoNormal>>Contact<o:p></o:p></p><p class=MsoNormal>>0462 455 46 80-----4687-4685<o:p></o:p></p><p class=MsoNormal>>fatihcelik@trabzon.edu.tr fatihcelik2842@gmail.com<o:p></o:p></p><p class=MsoNormal> <o:p></o:p></p><p class=MsoNormal><o:p> </o:p></p></div></body></html>