[R-meta] Help with Forest Plot – Avoiding Duplicate Display of Mean Difference and 95% CI
Emanuel Schembri
|e||d26 @end|ng |rom gm@||@com
Sat Apr 19 11:08:02 CEST 2025
Dear Meta Group,
Wishing you all a happy Easter period!
I’m currently using the meta package and working on including risk of
bias plots within a forest plot, which I have been able to set up
successfully. However, I’ve encountered an issue: the mean difference
and 95% confidence interval are appearing twice within the forest plot
output.
I’ve attached the resulting forest plot and the R code I used.
Could anyone kindly advise how to prevent the mean difference and 95%
CI from appearing twice in the plot?
Many thanks in advance for your help!
Kind regards,
Emanuel
library(tidyverse)
library(meta)
library('readxl')
setwd("D:/abc/testROB")
E1 = read_xlsx("D:/abc/testROB/test.xlsx")
head(E1)
str(E1)
> dput(E1)
structure(list(study = c("A", "B", "C", "D", "E"), year = c(2000,
2001, 2002, 2003, 2004), n.mt = c(35, 10, 54, 22, 32), mean.mt = c(4.7,
4.01, 2.2, 5.25, 4.07), sd.mt = c(2.8, 0.26, 1.5, 1.52, 1.89),
n.control = c(34, 10, 47, 21, 29), mean.control = c(5.7,
8.8, 2.5, 6.3, 4.73), sd.control = c(2.5, 0.29, 1.22, 1.73,
1.79), D1 = c("Low risk", "Some concerns", "Some concerns",
"Low risk", "Low risk"), D2 = c("Some concerns", "High risk",
"High risk", "Some concerns", "High risk"), D3 = c("Low risk",
"Low risk", "Some concerns", "Low risk", "Some concerns"),
D4 = c("Some concerns", "Some concerns", "High risk", "Some concerns",
"High risk"), D5 = c("Low risk", "Low risk", "Low risk",
"Low risk", "Low risk"), rob = c("Some concerns", "High risk",
"High risk", "Some concerns", "High risk")), class = c("tbl_df",
"tbl", "data.frame"), row.names = c(NA, -5L))
>
# Meta-analysis
m.publ = metacont(n.mt,
mean.mt,
sd.mt,
n.control,
mean.control,
sd.control,
common = T,
random = T,
studlab = paste0(study, " (", year, ")"),
data = E1,
sm = "MD"
)
m2 <- rob(D1, D2, D3, D4, D5, overall = rob, data = m.publ, tool = "rob2")
rob(m2)
forest(m2,
common = FALSE,
test.overall.random = TRUE,
prediction = TRUE,
print.Q = TRUE,
print.Q.pval = TRUE,
digits.pval = 2,
digits.sd = 1,
digits.weight = 1,
digits.mean = 1,
label.left = "Favours Therapy",
label.right = "Favours Control",
cilayout("(", "; "),
addrows = 1,
just = "center",
print.subgroup.name = FALSE,
text.random.w = "Subtotal (95% CI)",
label.e = "Therapy",
label.c = "Control",
layout = "RevMan5",
text.random = "Total (95% CI)",
text.w.random = "Random",
text.predict = "95% Prediction Interval",
col.label.right = "black",
col.label.left = "black",
xlim = c(-8, 5),
xlab = " \n Post-treatment",
ff.xlab = "bold"
)
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