Hii All,

i am facing a problem while loading the R/Bioconductor library
"clusterProfiler" on my MacOSX 10.6.8 macbookPro. The version of R used is
the latest one - R version 2.15.1 (2012-06-22).

Just to make matters simple i found a post from the archives, which seems
to be a similar problem as mine. Simon Urbanek had tried to deal with it,
however there was no concrete solution available in that post. Here is the
link for this post.

http://www.mail-archive.com/r-sig-mac@stat.math.ethz.ch/msg04609.html

The error message is pasted below. Please help me in this regard.

Thanks

gurudutta

``````````````````````````````````````````````````````````````````

R version 2.15.1 (2012-06-22) -- "Roasted Marshmallows"

Copyright (C) 2012 The R Foundation for Statistical Computing

ISBN 3-900051-07-0

Platform: x86_64-apple-darwin9.8.0/x86_64 (64-bit)

[R.app GUI 1.52 (6188) x86_64-apple-darwin9.8.0]

> library(clusterProfiler)

Loading required package: DBI

Loading Tcl/Tk interface ...

 *** caught segfault ***

address 0x11000080, cause 'memory not mapped'

Traceback:

 1: sys.parent()

 2: sys.function(sys.parent())

 3: formals(sys.function(sys.parent()))

 4: match.arg(encoding)

 5: match(match.arg(encoding), c("", "bytes", "UTF-8"))

 6: textConnection("rval", "w", local = TRUE)

 7: capture.output(print(args(GFF2GeneTable)))

 8: paste(capture.output(print(args(GFF2GeneTable))), collapse = "")

 9: gsub("\\s+", " ", paste(capture.output(print(args(GFF2GeneTable))),
collapse = ""))

10: doTryCatch(return(expr), name, parentenv, handler)

11: tryCatchOne(expr, names, parentenv, handlers[[1L]])

12: tryCatchList(expr, classes, parentenv, handlers)

13: tryCatch(expr, error = function(e) {    call <- conditionCall(e)    if
(!is.null(call)) {        if (identical(call[[1L]], quote(doTryCatch)))
        call <- sys.call(-4L)        dcall <- deparse(call)[1L]
prefix <- paste("Error in", dcall, ": ")        LONG <- 75L        msg <-
conditionMessage(e)        sm <- strsplit(msg, "\n")[[1L]]        w <- 14L
+ nchar(dcall, type = "w") + nchar(sm[1L], type = "w")        if (is.na(w))
            w <- 14L + nchar(dcall, type = "b") + nchar(sm[1L],
    type = "b")        if (w > LONG)             prefix <- paste0(prefix,
"\n  ")    }    else prefix <- "Error : "    msg <- paste0(prefix,
conditionMessage(e), "\n")    .Internal(seterrmessage(msg[1L]))    if
(!silent && identical(getOption("show.error.messages"),         TRUE)) {
    cat(msg, file = stderr())        .Internal(printDeferredWarnings())
}    invisible(structure(msg, class = "try-error", condition = e))})

14: try(gsub("\\s+", " ", paste(capture.output(print(args(GFF2GeneTable))),
    collapse = "")), silent = TRUE)

Possible actions:

1: abort (with core dump, if enabled)

2: normal R exit

3: exit R without saving workspace

4: exit R saving workspace

> GFF2GeneTable("")

Selection:

"""""""""""""""""""""""""""""""

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