Hello,

Not sure if this is a mac problem or not, so feel free to suggest a
redirect.

I am using GEOquerry to download raw microarray files.  If there is a space
in the path then curl gives an error.  If I remove the space from the path,
no error.  I am pretty sure that this error did not exist on R 2.12.2

> library(GEOquery)
> library(limma)
> library(affy)
>
> vte.supp <- getGEOSuppFiles(GEO="GSE4847")
[1] "ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/series/GSE4847/"
100 53.8M  100 53.8M    0     0   468k      0  0:01:57  0:01:57 --:--:--
 493k 0:00:01 --:--:--     0

curl: (6) Couldn't resolve host 'Club'
106  1063  106  1063    0     0     47      0  0:00:22  0:00:22 --:--:--
 7433  0:00:22 --:--:--     0

curl: (6) Couldn't resolve host 'Club'
Warning messages:
1: In download.file(file.path(url, i), destfile = file.path(storedir,  :
  download had nonzero exit status
2: In download.file(file.path(url, i), destfile = file.path(storedir,  :
  download had nonzero exit status
> sessionInfo()
R version 2.13.0 (2011-04-13)
Platform: i386-apple-darwin9.8.0/i386 (32-bit)

locale:
[1] en_US.UTF-8/en_US.UTF-8/C/C/en_US.UTF-8/en_US.UTF-8

attached base packages:
[1] stats     graphics  grDevices utils     datasets  methods   base

other attached packages:
[1] affy_1.30.0     limma_3.8.2     GEOquery_2.18.0 Biobase_2.12.1

loaded via a namespace (and not attached):
[1] affyio_1.20.0         preprocessCore_1.14.0 RCurl_1.6-5
tools_2.13.0          XML_3.4-0
> pwd()
Error: could not find function "pwd"
> getwd()
[1] "/Users/jmaloof/Documents/Teaching/R Club"

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