
Hi Kasper and Simon,

Thank you for your help. Simon, I was able to install a lot of other packages from source files, but the last message from Kasper gave me the answer, it's a package-specific problem.

Marije


-----Original Message-----
From: Kasper Daniel Hansen [mailto:khansen@stat.Berkeley.EDU]
Sent: Fri 5/12/2006 10:51 PM
 
And just to clarify, the error in affxparser is special to that  
package, and has nothing to do with the rest of the Bioconductor  
packages.

/Kasper

On May 12, 2006, at 1:43 PM, Kasper Daniel Hansen wrote:

> Having said that, affxparser does not work on Mac OS using the
> version of gcc shipped with R-2.3.0. We are working on it.
>
> /Kasper
>
> On May 12, 2006, at 8:39 AM, Simon Urbanek wrote:
>
>>
>> On May 12, 2006, at 8:36 AM, Booman, M wrote:
>>
>>> Hi Sean,
>>>
>>> Thanks for your reply. I managed to install most of them as source
>>> packages, but for a number of them (and of course the ones I need
>>> most) I got an error message saying that compilation failed. I have
>>> included an example at the bottom of this message.
>>>
>>> Marije
>>>
>>>
>>> trying URL 'http://www.bioconductor.org/packages/bioc/stable/src/
>>> contrib/affxparser_1.2.0.tar.gz'
>>> Content type 'application/x-gzip' length 234898 bytes
>>> opened URL
>>> ==================================================
>>> downloaded 229Kb
>>>
>>>
>>> The downloaded packages are in
>>> 	/private/tmp/RtmpTbWvX1/downloaded_packages
>>> * Installing *source* package 'affxparser' ...
>>> ** libs
>>> ** arch - ppc
>>> ** Removing '/Library/Frameworks/R.framework/Versions/2.3/Resources/
>>> library/affxparser'
>>> /Library/Frameworks/R.framework/Resources/bin/SHLIB: line 1: make:
>>> command not found
>>
>> ^^ - you don't have Apple Xcode tools installed. Those are required
>> to compile packages from sources.
>>
>> Cheers,
>> Simon
>>
>> _______________________________________________
>> R-SIG-Mac mailing list
>> R-SIG-Mac@stat.math.ethz.ch
>> https://stat.ethz.ch/mailman/listinfo/r-sig-mac
>
> _______________________________________________
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> R-SIG-Mac@stat.math.ethz.ch
> https://stat.ethz.ch/mailman/listinfo/r-sig-mac






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