<HTML><BODY style="word-wrap: break-word; -khtml-nbsp-mode: space; -khtml-line-break: after-white-space; "><DIV></DIV><DIV><BR class="khtml-block-placeholder"></DIV><DIV><BR class="khtml-block-placeholder"></DIV><DIV><BR class="khtml-block-placeholder"></DIV><BR><DIV><DIV>On Apr 20, 2006, at 12:59 PM, Simon Urbanek wrote:</DIV><BR class="Apple-interchange-newline"><BLOCKQUOTE type="cite"><DIV style="margin-top: 0px; margin-right: 0px; margin-bottom: 0px; margin-left: 0px; ">On Apr 20, 2006, at 12:47 PM, S Kong wrote:</DIV><DIV style="margin-top: 0px; margin-right: 0px; margin-bottom: 0px; margin-left: 0px; min-height: 14px; "><BR></DIV> <BLOCKQUOTE type="cite"><DIV style="margin-top: 0px; margin-right: 0px; margin-bottom: 0px; margin-left: 0px; ">Hello, I was trying to install BioConductor plier package under R64 of Simon's.<SPAN class="Apple-converted-space"> </SPAN>( Quad G5 + 10.4.6 + Xcode 2.2.1 + powerpc-apple-darwin8-gcc-4.0.1) The plier package is an expression index calculation algorithm for<SPAN class="Apple-converted-space"> </SPAN>Affymetrix microarray In the end, I gave up with the BioConductor plier package and started with Affymetrix plier source code to build .so. But errors were that dylib could not be found for libgfortran.0.dylib,<SPAN class="Apple-converted-space"> </SPAN>ibgcc_s.1.0.dylib, and libreadline.5.dylib. Those dylib are located at /usr/local/lib64/R/lib/</DIV><DIV style="margin-top: 0px; margin-right: 0px; margin-bottom: 0px; margin-left: 0px; ">Could anyone help me with this?</DIV><DIV style="margin-top: 0px; margin-right: 0px; margin-bottom: 0px; margin-left: 0px; ">Thanks!!!</DIV><DIV style="margin-top: 0px; margin-right: 0px; margin-bottom: 0px; margin-left: 0px; min-height: 14px; "><BR></DIV><DIV style="margin-top: 0px; margin-right: 0px; margin-bottom: 0px; margin-left: 0px; ">% R64 CMD SHLIB affyplier.cpp plieralg.cpp plier_impl.cpp rwrapper.cpp</DIV><DIV style="margin-top: 0px; margin-right: 0px; margin-bottom: 0px; margin-left: 0px; ">g++ -bundle -flat_namespace -undefined suppress -m64 -L/usr/local/lib</DIV><DIV style="margin-top: 0px; margin-right: 0px; margin-bottom: 0px; margin-left: 0px; ">-L/usr/local/lib64/R/lib -o affyplier.so affyplier.o plieralg.o</DIV><DIV style="margin-top: 0px; margin-right: 0px; margin-bottom: 0px; margin-left: 0px; ">plier_impl.o rwrapper.o <SPAN class="Apple-converted-space"> </SPAN>-L/usr/local/lib64/R/lib -lR</DIV><DIV style="margin-top: 0px; margin-right: 0px; margin-bottom: 0px; margin-left: 0px; ">ld64 warning: in affyplier.o, file does not contain requested</DIV><DIV style="margin-top: 0px; margin-right: 0px; margin-bottom: 0px; margin-left: 0px; ">architecture</DIV> </BLOCKQUOTE><DIV style="margin-top: 0px; margin-right: 0px; margin-bottom: 0px; margin-left: 0px; ">^^^- this is the actual error - it seems that something went wrong during the compilation, but you omitted that part, so we can't see what that was. Please send me the full output of the build process.</DIV><DIV style="margin-top: 0px; margin-right: 0px; margin-bottom: 0px; margin-left: 0px; min-height: 14px; "><BR></DIV><DIV style="margin-top: 0px; margin-right: 0px; margin-bottom: 0px; margin-left: 0px; ">Cheers,</DIV><DIV style="margin-top: 0px; margin-right: 0px; margin-bottom: 0px; margin-left: 0px; ">Simon</DIV><DIV style="margin-top: 0px; margin-right: 0px; margin-bottom: 0px; margin-left: 0px; min-height: 14px; "><BR></DIV> </BLOCKQUOTE></DIV><BR></BODY></HTML>