[R-SIG-Mac] R 4.4 crashes loading dplyr

peter dalgaard pd@|gd @end|ng |rom gm@||@com
Tue Apr 30 10:48:07 CEST 2024


Hmm, worx4me. At least from a fresh source build.

I am suspicious of the "4.2" in a number of entries in your log, e.g. 

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   "source" : "P",
   "arch" : "x86_64",
   "base" : 5029900288,
   "size" : 3260416,
   "uuid" : "c3e6d895-7059-3865-aa61-a941ea1c4569",
   "path" :
"\/Library\/Frameworks\/R.framework\/Versions\/4.2\/Resources\/lib\/libR.dylib",

   "name" : "libR.dylib"
 },

which suggests that you may be mixing incompatible binaries. Do you have an older private library on your search path? That has bitten me at some point.


- pd.

> On 30 Apr 2024, at 00:55 , Carl Witthoft <cellocgw using gmail.com> wrote:
> 
> I apologize if the file posted below is the wrong log.
> I start up R 4.4.0 on my iMac 13.5.2   , type 'library(dplyr)' and r.app
> gui  crashes immediately. Same for ggplot2, gert, stringr,  and others .
> 
> I have verified that I've updated every R library in my system.  I can
> successfully load other libs, e.g.,  Rmpfr,knitr, MASS, so I doubt it's a
> directory or permissions problem.
> 
> From the command line:
> library(dplyr)
> 
> *** caught segfault ***
> address 0x406e0, cause 'memory not mapped'
> 
> Traceback:
> 1: fun(libname, pkgname)
> 2: doTryCatch(return(expr), name, parentenv, handler)
> 3: tryCatchOne(expr, names, parentenv, handlers[[1L]])
> 4: tryCatchList(expr, classes, parentenv, handlers)
> 5: tryCatch(fun(libname, pkgname), error = identity)
> 6: runHook(".onLoad", env, package.lib, package)
> 7: loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck =
> vI[[j]])
> 8: asNamespace(ns)
> 9: namespaceImportFrom(ns, loadNamespace(j <- i[[1L]], c(lib.loc,
> .libPaths()), versionCheck = vI[[j]]), i[[2L]], from = package)
> 10: loadNamespace(package, lib.loc)
> 11: doTryCatch(return(expr), name, parentenv, handler)
> 12: tryCatchOne(expr, names, parentenv, handlers[[1L]])
> 13: tryCatchList(expr, classes, parentenv, handlers)
> 14: tryCatch({    attr(package, "LibPath") <- which.lib.loc    ns <-
> loadNamespace(package, lib.loc)    env <- attachNamespace(ns, pos = pos,
> deps, exclude, include.only)}, error = function(e) {    P <- if
> (!is.null(cc <- conditionCall(e)))         paste(" in", deparse(cc)[1L])
> else ""    msg <- gettextf("package or namespace load failed for %s%s:\n
> %s",         sQuote(package), P, conditionMessage(e))    if (logical.return
> && !quietly)         message(paste("Error:", msg), domain = NA)    else
> stop(msg, call. = FALSE, domain = NA)})
> 15: library(dplyr)
> 
> 
> 
> ---- ~/library/logs/diagnosticreports file pasted below --
> 
> {"app_name":"R","timestamp":"2024-04-29 11:11:39.00 -0400","app_version":"R
> 4.4.0 GUI 1.80 Big Sur Intel
> build","slice_uuid":"8311af3a-aa38-355b-acef-bbecbdb69a11","build_version":"8376","platform":1,"bundleID":"org.R-project.R","share_with_app_devs":0,"is_first_party":0,"bug_type":"309","os_version":"macOS
> 13.5.2
> (22G91)","roots_installed":0,"name":"R","incident_id":"059EF229-5343-4EE7-9843-B88A513B8019"}
> 
> {
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>  "procRole" : "Foreground",
>  "version" : 2,
>  "userID" : 502,
>  "deployVersion" : 210,
>  "modelCode" : "iMac19,2",
>  "coalitionID" : 1308,
>  "osVersion" : {
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>    "build" : "22G91",
>    "releaseType" : "User"
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>  "captureTime" : "2024-04-29 11:11:38.8062 -0400",
>  "incident" : "059EF229-5343-4EE7-9843-B88A513B8019",
>  "pid" : 55298,
>  "cpuType" : "X86-64",
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>  "bug_type" : "309",
>  "procLaunch" : "2024-04-29 11:10:04.6528 -0400",
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>  "procExitAbsTime" : 261588804970703,
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>  "bundleInfo" : {"CFBundleShortVersionString":"R 4.4.0 GUI 1.80 Big Sur
> Intel
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>  "storeInfo" :
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> 
>  "parentProc" : "launchd",
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> region: 4486408480\n      REGION TYPE                    START -
> END         [ VSIZE] PRT\/MAX SHRMOD  REGION DETAIL\n      UNUSED SPACE AT
> START\n--->  \n      __TEXT 10b6d3000-10b763000    [  576K] r-x\/r-x
> SM=COW  ...tents\/MacOS\/R",
>  "exception" : {"codes":"0x0000000000000001,
> 0x00000000000406e0","rawCodes":[1,263904],"type":"EXC_BAD_ACCESS","signal":"SIGSEGV","subtype":"KERN_INVALID_ADDRESS
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>  "termination" :
> {"flags":0,"code":11,"namespace":"SIGNAL","indicator":"Segmentation fault:
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>  "vmregioninfo" : "0x406e0 is not in any region.  Bytes before following
> region: 4486408480\n      REGION TYPE                    START -
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> START\n--->  \n      __TEXT 10b6d3000-10b763000    [  576K] r-x\/r-x
> SM=COW  ...tents\/MacOS\/R",
>  "extMods" :
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> \nCoreGraphics                        12K        2 \nCoreImage
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> 824K       26 \n===========                     ======= =======
> \nTOTAL                              7.2G     2359 \nTOTAL, minus reserved
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> }
> 
> -- 
> Carl Witthoft
> 
> 	[[alternative HTML version deleted]]
> 
> _______________________________________________
> R-SIG-Mac mailing list
> R-SIG-Mac using r-project.org
> https://stat.ethz.ch/mailman/listinfo/r-sig-mac

-- 
Peter Dalgaard, Professor,
Center for Statistics, Copenhagen Business School
Solbjerg Plads 3, 2000 Frederiksberg, Denmark
Phone: (+45)38153501
Office: A 4.23
Email: pd.mes using cbs.dk  Priv: PDalgd using gmail.com



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