[R-SIG-Mac] [External] Rmpfr crashes on Mac

Kevin Ushey kev|nu@hey @end|ng |rom gm@||@com
Mon Nov 29 00:30:18 CET 2021


I can reproduce something similar on my M1 macOS machine, when using the
x86_64 build of R. I see:

> x1 <- mpfr(-50, 200)
 *** caught illegal operation ***
address 0x10c5f623b, cause 'illegal opcode'

This is with the binary of Rmpfr 0.8-7 as from CRAN, with R 4.1.2. Here's
what LLDB says:

* thread #1, queue = 'com.apple.main-thread', stop reason =
EXC_BAD_INSTRUCTION (code=EXC_I386_INVOP, subcode=0x0)
    frame #0: 0x000000010f69c23b Rmpfr.so`mpfr_set_d + 43
Rmpfr.so`mpfr_set_d:
->  0x10f69c23b <+43>: vucomisd %xmm0, %xmm0
    0x10f69c23f <+47>: jp     0x10f69c39a               ; <+394>
    0x10f69c245 <+53>: vpxor  %xmm1, %xmm1, %xmm1
    0x10f69c249 <+57>: vucomisd %xmm1, %xmm0

And the relevant part of the stack trace:

(lldb) bt
* thread #1, queue = 'com.apple.main-thread', stop reason =
EXC_BAD_INSTRUCTION (code=EXC_I386_INVOP, subcode=0x0)
  * frame #0: 0x000000010f69c23b Rmpfr.so`mpfr_set_d + 43
    frame #1: 0x000000010f6809d3 Rmpfr.so`d2mpfr1_(x=-50,
i_prec=<unavailable>, rnd=MPFR_RNDN) at convert.c:129:5 [opt]
    frame #2: 0x000000010f680eb0 Rmpfr.so`d2mpfr1_list(x=<unavailable>,
prec=<unavailable>, rnd_mode=<unavailable>) at convert.c:186:29 [opt]

At least for my case, my guess is that the 'vucomisd' instruction isn't
available via Apple's Rosetta emulation. It's possible users with older
macOS machines not supporting AVX instructions could see this, as well?

Best,
Kevin

On Sun, Nov 28, 2021 at 9:54 AM Richard M. Heiberger <rmh using temple.edu> wrote:

> Works normally in R-4.1.2 with Rmpfr_0.8-7 on Macintosh
> aarch64-apple-darwin20
> I am running inside Emacs using ESS
>
> > packageVersion("Rmpfr")
> [1] ‘0.8.7’
> > library(Rmpfr)
> Loading required package: gmp
>
> Attaching package: ‘gmp’
>
> The following objects are masked from ‘package:base’:
>
>     %*%, apply, crossprod, matrix, tcrossprod
>
> C code of R package 'Rmpfr': GMP using 64 bits per limb
>
>
> Attaching package: ‘Rmpfr’
>
> The following object is masked from ‘package:gmp’:
>
>     outer
>
> The following objects are masked from ‘package:stats’:
>
>     dbinom, dgamma, dnbinom, dnorm, dpois, dt, pnorm
>
> The following objects are masked from ‘package:base’:
>
>     cbind, pmax, pmin, rbind
>
> > x1 <- mpfr(-50, 200)
> > x1
> 1 'mpfr' number of precision  200   bits
> [1] -50
> > x2 <- mpfr(-50.1, 200)
> > x2
> 1 'mpfr' number of precision  200   bits
> [1] -50.10000000000000142108547152020037174224853515625
> > version
>                _
> platform       aarch64-apple-darwin20
> arch           aarch64
> os             darwin20
> system         aarch64, darwin20
> status
> major          4
> minor          1.2
> year           2021
> month          11
> day            01
> svn rev        81115
> language       R
> version.string R version 4.1.2 (2021-11-01)
> nickname       Bird Hippie
> >
>
> > On Nov 27, 2021, at 15:46, Dev Chakraborty <dpc10ster using gmail.com> wrote:
> >
> > I used package Rmpfr ca. 2017 and it worked fine. The latest version
> > (0.8-7) causes R (running under RStudio) to crash. A simple example is:
> >
> > library(Rmpfr)
> > x1 <- mpfr(-50, 200)
> > x2 <- mpfr(-50.1, 200)
> >
> > Which gives the message:
> >
> > R Session Aborted
> > R encountered a fatal error
> > The session was terminated
> > Start New Session
> >
> > I am using R version 4.1.1 on a Mac running MacOS 12.0.1. and an older
> iMac
> > running 10.15.7. The problem occurs with both machines.
> >
> > When I install from the CRAN archive file  Rmpfr_0.6-1.tar.gz (the
> version
> > of the package around 2017, corresponding to the last time I used it) the
> > problem goes away.
> >
> >       [[alternative HTML version deleted]]
> >
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