[R-SIG-Mac] [External] Re: [External] Re: [External] Re: [External] Please test R 4.0.4 RC

Sun Feb 14 01:22:46 CET 2021

It is looking for:
 missing xcrun at: /Library/Developer/CommandLineTools/usr/bin/xcrun

This is the entirety of
  /Library/Developer/CommandLineTools/usr/share/

  /Library/Developer/CommandLineTools/usr/share/man:
  total used in directory 40 available 1.3 TiB
  drwxr-xr-x  3 root  wheel     96 Feb 11 12:34 .
  drwxr-xr-x  3 root  wheel     96 Feb 11 12:34 ..
  -rw-r--r--  1 root  wheel  20198 Jan 27 16:11 whatis

So I will again try
sudo xcode-select --install

It took a few minutes, and now from a new R session
> X11()
Error in .External2(C_X11, d$display, d$width, d$height, d$pointsize,  : 
  unable to start device X11
In addition: Warning message:
In X11() : unable to open connection to X11 display ''
> Sys.getenv("DISPLAY")
[1] "/private/tmp/com.apple.launchd.l0xAmiv83n/org.xquartz:0"
> Sys.setenv(DISPLAY=":0.0")
> Sys.getenv("DISPLAY")
[1] ":0.0"
> X11()
Error in .External2(C_X11, d$display, d$width, d$height, d$pointsize,  : 
  unable to start device X11
In addition: Warning message:
In X11() : unable to open connection to X11 display ''
> 

the xcrun is still not on the machine, and specifically not in /Library/Developer/CommandLineTools/
________________________________________
From: Dr Eberhard W Lisse <el using lisse.na>
Sent: Saturday, February 13, 2021 6:50 PM
To: Duncan Murdoch; R-SIG-Mac; Richard M. Heiberger
Cc: el using lisse.NA
Subject: Re: [External] Re: [R-SIG-Mac] [External] Re: [External] Re: [External] Please test R 4.0.4 RC

Remove the directory where xcrun says it is supposed to live and re-install the command line tools?

el

—
Sent from Dr Lisse’s iPhone
On 14 Feb 2021, 01:41 +0200, Richard M. Heiberger <rmh using temple.edu>, wrote:
I reported on installing xcode tools in my email
Sat 2/13/2021 3:59 PM
It didn't help.

I did all this R_4.0.4 RC testing after updating to Big Sur 11.2.1.

________________________________________
From: Dr Eberhard W Lisse <el using lisse.na>
Sent: Saturday, February 13, 2021 4:44 PM
To: Duncan Murdoch; R-SIG-Mac; Richard M. Heiberger
Cc: el using lisse.NA
Subject: [External] Re: [R-SIG-Mac] [External] Re: [External] Re: [External] Please test R 4.0.4 RC

the Xcode Command line tools are missing. Install them and see what happens.

Did you recently upgrade MacOS?

el

—
Sent from Dr Lisse’s iPhone
On 13 Feb 2021, 23:21 +0200, Richard M. Heiberger <rmh using temple.edu>, wrote:
That is next. Again a fresh session.

setwd('/Users/rmh/Rwd/')
Sys.setenv(DISPLAY=":0.0")
X11()
xcrun: error: invalid active developer path (/Library/Developer/CommandLineTools), missing xcrun at: /Library/Developer/CommandLineTools/usr/bin/xcrun
Error in .External2(C_X11, d$display, d$width, d$height, d$pointsize, :
unable to start device X11
In addition: Warning messages:
1: In system2("otool", c("-L", shQuote(DSO)), stdout = TRUE) :
running command ''otool' -L '/Library/Frameworks/R.framework/Resources/modules/R_X11.so'' had status 1
2: In X11() : unable to open connection to X11 display ''

and the R session is still alive.

This rasies for me a different question. Why should I want X11()?

When X11 was working it was very slow, and didn't allow paging back through
previous images.

In favor of X11, I think it uses the display space better. X11() has better size and spacing for xlab, ylab, and main than quartz(). But that isn't a strong enough
reason to use it while develkoping a graph. When I want it to look good,
I go directly to pdf() and get the spacing that I think looks better.

________________________________________
From: Duncan Murdoch <murdoch.duncan using gmail.com>
Sent: Saturday, February 13, 2021 4:05 PM
To: Richard M. Heiberger; R-SIG-Mac
Subject: [External] Re: [R-SIG-Mac] [External] Re: [External] Please test R 4.0.4 RC

Have you tried the change to DISPLAY, i.e.

Sys.setenv(DISPLAY=":0.0")

before running X11()?

Duncan Murdoch

On 13/02/2021 3:50 p.m., Richard M. Heiberger wrote:
I tried this. It made no difference. Both before and after running
sudo xcode-select —install
I ran (in both cases, in a brand new *R* sessio n)

X11()
xcrun: error: invalid active developer path (/Library/Developer/CommandLineTools), missing xcrun at: /Library/Developer/CommandLineTools/usr/bin/xcrun

My prior was that the xcode call was irrelevant is that X11() using XQuart 8.0.3beta
worked with intel R_4.0.3 on the Mac M1.

________________________________________
From: Dr Eberhard W Lisse <el using lisse.na>
Sent: Saturday, February 13, 2021 3:33 AM
To: Simon Urbanek; R-SIG-Mac; Richard M. Heiberger
Cc: el using lisse.NA
Subject: [External] Re: [R-SIG-Mac] [External] Please test R 4.0.4 RC

that has nothing to do with Xquartz but means you need to install the Command line tools

sudo xcode-select —install

—
Sent from Dr Lisse’s iPhone
On 13 Feb 2021, 06:13 +0200, Richard M. Heiberger <rmh using temple.edu>, wrote:
Using the intel R_4.0.4RC on the Mac M1.

Based on your recommendation I reinstalled XQuartz 2.7.11 instead of the 8.0.3beta.
X11() now does not work at all.

X11()
xcrun: error: invalid active developer path (/Library/Developer/CommandLineTools), missing xcrun at: /Library/Developer/CommandLineTools/usr/bin/xcrun
C-c C-c C-c C-c

Force-Killing XQuartz from the Activity Monitor doesn't help.
I have to Force-kill the R process.

________________________________________
From: R-SIG-Mac <r-sig-mac-bounces using r-project.org> on behalf of Simon Urbanek <simon.urbanek using R-project.org>
Sent: Friday, February 12, 2021 6:50 PM
To: R-SIG-Mac
Subject: [External] [R-SIG-Mac] Please test R 4.0.4 RC

Dear macOS useRs,

please test the latest R 4.0.4 RC builds from

https://mac.r-project.org/

especially if you are running macOS Big Sur. The known issues introduced by Big Sur have been fixed, but I cannot replicate nor test the spurious touchbar warning.

Also a reminder to *not* install XQuartz betas even if XQuartz ask you to - they are betas for a reason (=unstable) and break things.

Cheers,
Simon

_______________________________________________
R-SIG-Mac mailing list
R-SIG-Mac using r-project.org
https://stat.ethz.ch/mailman/listinfo/r-sig-mac

_______________________________________________
R-SIG-Mac mailing list
R-SIG-Mac using r-project.org
https://stat.ethz.ch/mailman/listinfo/r-sig-mac

_______________________________________________
R-SIG-Mac mailing list
R-SIG-Mac using r-project.org
https://stat.ethz.ch/mailman/listinfo/r-sig-mac

_______________________________________________
R-SIG-Mac mailing list
R-SIG-Mac using r-project.org
https://stat.ethz.ch/mailman/listinfo/r-sig-mac